Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTGgtatatttctccagcataatctacatatggtgtttagataacctctactttcactgatgtttctttcttttgtgcaaccag

Basic information

species Oryza sativa
transcript LOC_Os03g03400.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G382537_T01 (Zea mays), 5'ss of exon 6
CTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTGgtatattt-------ctccagcataatctacatatggtgt-----ttagataacctctactttcactgatgtttctttcttttgtgcaaccag---
|||||||||||||||||||| ||||| |||||  |||||||||||||||||||||        |||  ||||||||||||||||  |     || | |||||| || ||||  | |  ||   || || | |      |    
CTCATTCCACTTGGAACTGGCTCAGATTTTGCTTGGACATTTGGCTGgtatatttgtttcctttcccacataatctacatatggcttgattatttgttaacctttattttctgtaaatttctattgttgtttatttttactag

upper sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G812553_T02 (Zea mays), 5'ss of exon 6
CTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTGgtatattt-------ctccagcataatctacatatggtgt-----ttagataacctctactttcactgatgtttctttc-ttttgtgcaaccag
|||||||||||||||||||| ||||| |||||  |||||||||||||||||||||       |||| |    | |||||||||   |     || | |||||| || || |  | |  || ||||  |||  |   |||||
CTCATTCCACTTGGAACTGGCTCAGATTTTGCTCGGACATTTGGCTGgtatatttgtttcctctcctgtgcgagctacatatgacttggttatttgttaacctttatttcctgtaaaattgcttttgtttctttttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682220|gb|CK070907.1|CK070907
EST:     CTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTG                         GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAG
genomic: CTCATTCCACTTGGAACTGGTTCAGACTTTGCAAGGACATTTGGCTGgtatatttct ... gtgcaaccagGACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAG