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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattttcttcattcgtgttttgaattttctgcgctaacatctagcttatcagtcaagaataccttaatctctgaatggtaggccagaaaaatctt...

Basic information

species Oryza sativa
transcript LOC_Os03g02756.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 5
GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattttctt-cattcgtgttttgaattttctgcgctaacatctagcttatcagtcaagaataccttaatctctgaatggtaggccagaaaaatctt----
| |||||||||||||||||   |||   ||||||||||||||||||||||||||| | |||| ||||    | |  |||| ||||||   |      |||   |   |        ||    ||   ||  || | |||      |||  | |     
GATTCAACTCAACTCTGCGTCAAGGATGCATAACTCATCATGAATATATTCAGgttttaattctcttatccttgcctttttaatttttgtcatccgtatcacaccctttt-----taacctttttgactacgagttgtatcatttaaagttttcaaag

upper sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S13_132V6.1 (Physcomitrella patens), 5'ss of exon 39
GGTTCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattttcttcattcgtgttttgaattttctgcg------ctaacatctagc--ttatcagtcaa---gaataccttaatctctgaatggtaggccag----aaaaatctt---
||||||| || ||| | ||  ||||||| || ||||||||||||||||||||||||  |    |    |  ||  |        ||  | |      | ||  | |||   ||||   |  |   ||  || | ||| |   | || |      |        || ||   
GGTTCAATTCCACTTTACGACTAGGGAATATTACTCATCATGAATATATTCAGgtcgcacgcattcatacacgcatcggacgcctttggtgattaatccaatctgtagtagttatgttttgaaatgagcacttcaatttacaattgttgatttggttctgtgtattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29615116|gb|CB620129.1|CB620129
EST:     TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATGTTCAG                         GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
EST: gi|300216075|gb|HO088701.1|HO088701
EST:     TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATGTTCAG                         GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
EST: gi|88399969|gb|CI588273.1|CI588273
EST:     TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG                         GTTGGAAAGGGAAGAGACGTTGG
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGG
EST: gi|29613902|gb|CB618915.1|CB618915
EST:     CATAACTCATCATGAATATGTTCAG                         GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
genomic: CATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
EST: gi|29675246|gb|CB671521.1|CB671521
EST:     TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG                         GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA