1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattctttcatcatctctgcatcccactggaaactgatgacgattgacgagtacaaattttatagagcttatgcaattaaccttctcgctctttttctgcttggtttgtag
species | Oryza sativa |
transcript | LOC_Os03g02590.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|89187844|gb|CI009828.1|CI009828
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88836930|gb|CI008366.1|CI008366
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|218504458|gb|FG953020.1|FG953020
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88984635|gb|CI009411.1|CI009411
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|33662420|gb|CF293387.1|CF293387
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|218490956|gb|FG953067.1|FG953067
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|33664837|gb|CF295804.1|CF295804
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|89195811|gb|CI007230.1|CI007230
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|86415722|gb|CI029733.1|CI029733
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|15854786|gb|BI807598.1|BI807598
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: CGAGAGA-CTGAGGGATACTG-CCAATATGAG AATGACCCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTA-CEST: gi|38480632|gb|CF964721.1|CF964721
genomic: CGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGA-CCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGC
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88981185|gb|CI026937.1|CI026937
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|86852434|gb|CI320359.1|CI320359
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88965198|gb|CI009234.1|CI009234
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88995411|gb|CI036986.1|CI036986
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|18386960|gb|BM420158.1|BM420158
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|86415835|gb|CI029846.1|CI029846
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|29687966|gb|CB684241.1|CB684241
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88216352|gb|CI216201.1|CI216201
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|15858218|gb|BI811030.1|BI811030
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGA-CTGAGGGATACTGAC-AATATGAG AATGACCAGTACAAGAGCAAGATGAAACCGTCGGATGAACGGCTGCTAGCAEST: gi|88985254|gb|CI006908.1|CI006908
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88215926|gb|CI215775.1|CI215775
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: GGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|11863341|gb|AT003766.1|AT003766
genomic: GGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGNAAGCTGGCGAGAGAGNTGAGGGATNCTGNCAAATATGAG AATG-CCAGTACAAGAGCAAGATGAAACAGTCGGATGANCGGCTGCTAGCAEST: gi|88844108|gb|CI001165.1|CI001165
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATCGAACGGCTGCTAGCEST: gi|86829554|gb|CI286745.1|CI286745
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGAT-GAACGGCTGCTAGC
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGEST: gi|89178535|gb|CI015240.1|CI015240
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCG
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88217343|gb|CI217192.1|CI217192
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88836931|gb|CI008367.1|CI008367
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|25798400|gb|CA754361.1|CA754361
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACNAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|88986549|gb|CI033692.1|CI033692
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCAEST: gi|15856482|gb|BI809294.1|BI809294
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCA
EST: ATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACACAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGCEST: gi|58585983|gb|CF984291.1|CF984291
genomic: ATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACA-AATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGCTAGC
EST: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAG AATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGC
genomic: AATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattc ... tggtttgtagAATGACCAGTACAAGAGCAAGATGAAACAGTCGGATGAACGGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAGAGCTTAAGAGGCTATCAAAATCAATGAGGAAGCTGGCGAGAGAGCTGAGGGATACTGACAAATATGAGgtgtgcattctttcatcatctctgcatcccactggaaactgatgacgattgacgagtacaaattttatagagcttatgcaattaaccttctcgctctttttctgcttggtttgtag
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGA