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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgtgcttttctttccttcgtatcatctagctttaatgtttgattcatcattaaagttggggctacatatatctttgtcgatattattgtgtggcctcggtc...

Basic information

species Oryza sativa
transcript LOC_Os03g02150.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 6
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgtgcttttctttccttcgtatcatctagctttaatgtttgattcatcattaaagttggggctacatatatctttgtcgatattattgtgtggcctcggtc-
||| ||||||||||||||||| |||||||||||  | |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||  ||||| | |  || ||| |        | || ||| || | ||||||| || ||  |  ||    |    |   | ||   |    |    | 
TTGTCTTCCAAAATGTGTAAGAATATTGGAGAGATTAGCAAGAAATCAAGATATTCCACAAGAGTACACTTATTATGGAATTCCATCTCCTTGGCTTCAGgtacttccctttcatgc-cattatccattcaaccagcttcatttattagtaaagttaggcctttacttagtagtcattaggctgttaccttctattaagct

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 7
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgtgcttttctttccttcgtatcatctagctttaat---gtttgattcatcattaaagttggggctacatatatctttgtcgatattattgtgtggcctcggtc
||| ||||| |||||||| || |||||||||||| | |||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| | |   |  | ||| | |||||   | || ||   | |||||  |||| |||| || || ||| |||| | |||    |  |  |  |  ||||      
TTGTCTTCCTAAATGTGTGAGAATATTGGAGAGGTTAGCAAGAAATCAAGATATTCCACAAGAGTACACTTACTATGGAATTCCATCTCCTTGGCTTCAGgtacgtacttccctttcatgtcatcatccattcatccagcttgatctatcagtaaaattagg-ctagatatgtatttaattac-tggtcattaggccgttac-

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgt------gcttttctttccttcgtatcatctagctttaatg-tttgattcatcattaaagttggggctacatatatctttg-tcgatattattgtgtggcctcggtc---------------------------------------------------------------------
||| ||||| || ||| | |  || || ||  || | || || ||||| ||||||||||||||||||||||| || || || |||||||| |||||||||||        |||||||| | ||  || || |  || || ||  |||  |  |    | | ||  |  | |   | |    | | | | |||||| |   |    ||                                                                      
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaat-atatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttgcttttattgagaaccaaaagtgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 6
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgtgcttttcttt-----ccttcgtatcatctagctttaatg------tttgattcatcattaaagttg--gggctacatatatctttgtcgatattattgtgtggcctcggtc------------------------
||| ||||| || ||| | |  || || ||  || | || || ||||| ||||||||||||||||||||||| || || || |||||||| |||||||||||   |   |||       ||  |     |||   |||         ||| ||| |  |  |||  ||  |  ||| || | |  || || |     ||        |  ||                         
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtaaatttaggaatatttttgaatgctactcttaccagcttgcttttattgagaaccaaaaatgttgaactaaattttttcttatccagcaagttaaccttttttagtgtttaacaatttttgcttactgtag

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 6
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgtgcttttctttccttcgtatcatctagctttaatgtttgattcatcattaaagttggg--gctacatatatctttgtcgatattattgtgtggcctcggtc
||| || ||||| ||||| | |||  |||||||| | || || || || ||| | ||||||||||||||||| ||||| || ||| |||| |||||||||||   | |      ||  | |  |  | |  ||| ||   ||        |||         | | ||  |    |    | |   ||||   |||  |   
TTGTCTCCCAAAGTGTGTTAAGATTCTGGAGAGGCTTGCTAGGAATCAGGATGTTCCACAAGAATACACTTACTATGGTATCCCAACTCCCTGGCTTCAGgtttgtgtgcccattttctttacttaatccctaaagtaatatgggctgaaaaaaaaaaataacaagatgaaaaaataa-aaaacctttgttcagccaggca-

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S507_6V6.1 (Physcomitrella patens), 5'ss of exon 6
TTGCCTTCCAAAATGTGTAAGGATATTGGAGAGGATGGCAAGAAACCAAGATATCCCACAAGAATACACTTATTATGGAATTCCATCTCCATGGCTTCAGgtgcttttctttccttcgtatcatctagctttaatgtttgattcatcattaaagttggggctacatat-atctttgtcgata--ttattgtgtggcctcggtc
|||  | |||||||||||| ||||  | ||  |  || | ||    |||||||| ||||||||||||||||| ||||| || || ||||| ||| | |||||| |||  | | | |  | |||  |||  ||| ||||  ||  |    |  || ||    |  || |   ||||   | ||  | ||  ||| |    ||  
TTGTGTACCAAAATGTGTACGGATCCTAGAACGCCTGACCAGGGGTCAAGATATTCCACAAGAATACACTTACTATGGCATCCCCTCTCCTTGGTTGCAGgtgatttcttattcatt-tgtcagttagaatta-tgttgcatataattgtggagctgct-ttgtatgttgactttccaggtagctaatcatgttgatggggaa