1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtcctttctgggtacaaagaacagttttttttttaggtgtgtgtgttttttagggggtgtccccctcttgactccttttctgccctcctaccttgaatctaccatgtacttgacgttacaatgctcttcaatctcgtggtgcttcaacag
species | Oryza sativa |
transcript | LOC_Os03g01150.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCAC-G GTCAAGAATTTCAEST: gi|29619262|gb|CB624274.1|CB624274
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCA
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|66916126|gb|CX102974.1|CX102974
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|29661631|gb|CB657906.1|CB657906
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|29619263|gb|CB624275.1|CB624275
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|29661632|gb|CB657907.1|CB657907
genomic: GTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|88324289|gb|CI566102.1|CI566102
genomic: GAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GAACCTGATTGGTCCAGCCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCACTCATGCTGEST: gi|58678057|gb|CK066744.1|CK066744
genomic: GAACCTGATTGGTCGAGC-AGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTG
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|25797306|gb|CA753267.1|CA753267
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTGEST: gi|117235882|gb|CT847837.1|CT847837
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
EST: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCG GTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
genomic: GGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtc ... gcttcaacagGTCAAGAATTTCATTTCACTCGGTGGCCCTCATGCTGGTACTGCTTCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAACCTGATTGGTCGAGCAGTTGTTGAGTTTTGTGATGATGGGCCACCGgtgagttgtcctttctgggtacaaagaacagttttttttttaggtgtgtgtgttttttagggggtgtccccctcttgactccttttctgccctcctaccttgaatctaccatgtacttgacgttacaatgctcttcaatctcgtggtgcttcaacag
- - - - - - - - GAGCAG