Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacattttattcttcttttttgaaaaagggttcattttactccctcaaattattttgccaaagggcctaggtttttatggttcaccccttaaacta...

Basic information

species Oryza sativa
transcript LOC_Os02g58730.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58730.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G375002_T02 (Zea mays), 5'ss of exon 5
GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacattttattcttcttttttgaaaaagggttcattttactccctcaaattattttgccaaagggcctaggtttttatggttcaccccttaaacta
||||||||||||||||| || |||||||| || || ||||| ||||||||||||||||| ||||| |||||          |  ||   | ||   ||  || |  | ||    |    |  || ||   |  | |    | || | ||   | ||    |     
GGCGAAGAGCTGAGGAAGCTAATTGGTGCTGCCGCCTACATCGAATGCAGTTCAAAAACCCAGCAGgtactgtcgccccagcg-ctagctagattcagcattgagctcacctgtt---gtgtttgtggttactgactgttgcttctttgcacctccatccag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30228239|gb|CB966130.1|CB966130
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         A-CATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|11233552|gb|AU164964.1|AU164964
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|163920266|gb|EG714451.1|EG714451
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88269641|gb|CI380939.1|CI380939
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|163918056|gb|EG713984.1|EG713984
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88279468|gb|CI400468.1|CI400468
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCCA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCC
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88832933|gb|CI369823.1|CI369823
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|86861523|gb|CI328204.1|CI328204
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|25807453|gb|CA763414.1|CA763414
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|163928416|gb|EG715420.1|EG715420
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|30229558|gb|CB967449.1|CB967449
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAA-CACAGCAA                         A-CATCCAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|11233553|gb|AU164965.1|AU164965
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|117226289|gb|CT846197.1|CT846197
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|32947879|gb|BP184451.1|BP184451
EST:     ACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAAGCCTT
genomic: ACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACA-GCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCA-GCCTC
EST: gi|86869483|gb|CI346343.1|CI346343
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|86415824|gb|CI029835.1|CI029835
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|163929342|gb|EG713767.1|EG713767
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88834954|gb|CI370257.1|CI370257
EST:     AACTCATT-GTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAA                         AACATCAAGGCAAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTC
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGC-AAgtactacatt ... gcaactgcagAACATCAAGGC-AGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTC
EST: gi|7134822|gb|AU082691.1|AU082691
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|25802725|gb|CA758686.1|CA758686
EST:     ACTCATTNGGTGCACCGGCATACATGGAATGCAGTTCAAAAACACAGCCA                         N
genomic: ACTCATT-GGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcag-
EST: gi|25802725|gb|CA758686.1|CA758686
EST:     ACTCATTNGGTGCACCGGCATACATGGAATGCAGTTCAAAAACACAGCCA                         N
genomic: ACTCATT-GGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcag-
EST: gi|86599058|gb|CI355675.1|CI355675
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|2431385|gb|C73805.1|C73805
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88375099|gb|CI523364.1|CI523364
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|14980894|gb|BI305572.1|BI305572
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88251317|gb|CI349745.1|CI349745
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATC-AGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|58594206|gb|CF992514.1|CF992514
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCA
EST: gi|33802329|gb|CF327038.1|CF327038
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88260942|gb|CI364518.1|CI364518
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|7134824|gb|AU082692.1|AU082692
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|88322185|gb|CI537768.1|CI537768
EST:     AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
EST: gi|86598350|gb|CI354967.1|CI354967
EST:     AACTCATT-GTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA                         AACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA
genomic: AACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAAgtactacatt ... gcaactgcagAACATCAAGGCAGTTTTCGATGCTGCGATTAAGGTGGTTCTCCAGCCTCCA