Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTTGCGATCAATATTTTGGGTAGATTCTTGTCGAATCGTGATAATAATATAAGgttaaaccttgcctgttccttgagttatatcagtttcctgttgttgatatagtaccatacacgacatgaatgaggctacgatgttctttttattagcata...

Basic information

species Oryza sativa
transcript LOC_Os02g56110.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56110.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G054210_T01 (Zea mays), 5'ss of exon 6
GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTTGCGATCAATATTTTGGGTAGATTCTTGTCGAATCGTGATAATAATATAAGgttaaaccttgcctgttccttgagttatatcagtttcctgttgttgatatagtaccatacacgacatgaatgaggctacgatgttctttttattagcata--
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| || ||||||||||  |   ||   |  |  |||   |  ||  | ||  |||| ||  |    |    || |   | ||     |  ||   | ||||          |||  
GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTGGCAATCAATATTTTGGGTAGATTCTTGTCTAACCGTGACAACAATATAAGgtcga-tattcttttcttgttgctctcgatt-gcttattgtttttcctgcttttttttataaaccttgttcatgtttagtttcttctaccatgctcgataga

upper sequence: LOC_Os02g56110.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 5
GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTTGCGATCAATATTTTGGGTAGATTCTTGTCGAATCGTGATAATAATATAAGgttaaaccttgcctgttccttgagttatatcagtttcctgttgttgatatagtaccatacacgacatgaatgaggctacgatgttctttttattagcata-
||||||| || |||||| | ||||||| || | |||| |||||||| ||||| || |||||  |||| ||||||||||| || ||||| || ||||| ||||| |    ||    || |||   ||  || |||  |     |||   ||     | |||   |||  |        |   |   | ||  |       | 
GTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTGTACTTGCCATTAATATCCTGGGAAGATTCTTGTCAAACCGTGACAACAATATCAGgtttatttctggtcattgcttctctttcataagtaactgaaagttttgattaagacctac-taacaccagcacattgagcgttcacattgcaaagttccac

upper sequence: LOC_Os02g56110.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 6
GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTTGCGATCAATATTTTGGGTAGATTCTTGTCGAATCGTGATAATAATATAAGgttaaaccttgcctgttccttgagttata--tcagtttcctgttgttgatatagtaccatacacgacatgaatgaggctacgatgttctttttattagcata
||||| | ||||| ||| | ||||||| ||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||| || ||||| |||| |||  ||   | ||  ||   ||  |  |||   |     ||   |||| ||    |        |  || ||  | | | |||  | |||| |     
GTGTTGAAACTATTATGAGCATTGAAGATACTAGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTGTCAAATCGTGACAACAATATCAGgt-aaattttcattattttttattttggagttcaacctaggcatgaatatatggtctatttatttttgttgattagattcctaagttgctattatcattgg-

upper sequence: LOC_Os02g56110.2 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S211_68V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTTGCGATCAATATTTTGGGTAGATTCTTGTCGAATCGTGATAATAATATAAGgt---taaaccttgcctgttccttgagttatatcagtttcctgttgttgatatagtaccatac-acgacatgaatgaggc-tacgatgttctttttattagcata
|||| ||||| || |||| ||| ||  ||| | | ||  | |||||||||||  | |||||||||||  | |||||| | || |||||||||||||||||||     |||  ||| |  |  |||  || | | || ||       || ||    | | ||   |  || |   |  ||  |||  || ||     ||| |    
GTGTGCAGACAATCATGGCTATAGAGTCTATTGGGGGCCTTCGTGTGCTTGCTGTTAATATTTTGGGACGCTTCTTGGCAAACCGTGATAATAATATAAGgtactctaacaatgcatcatttttgt-ttgtttaagctttgaaggatttatgctttgctatgttattacctatttttggtgtactgtgatccaagaattgg----

upper sequence: LOC_Os02g56110.2 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S149_72V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGTTCAGACTATAATGGGTATTGAAGCTACTAGTGGTTTACGTGTGCTTGCGATCAATATTTTGGGTAGATTCTTGTCGAATCGTGATAATAATATAAGgttaaaccttgcctg----ttccttgagttatatcagtttcctgttgtt--gatatagtaccatacacgacatgaatgaggctacgatgttctttttattagcata
|||| || || || ||||  || || |||| |  |||  | || || || || || || ||||||||| | |||||| ||||||||||||||||||||||||  |  ||  |||       | | |  || | | ||  ||| ||| ||  | | || | |            | ||  |     ||        | |||      
GTGTACAAACAATCATGGCCATAGAGGCTATTGCTGGCCTTCGCGTACTGGCTATTAACATTTTGGGTCGCTTCTTGGCGAATCGTGATAATAATATAAGgtacactctgtcctcaaatcacatcggcttctctaagcgtcccgttcttttgctttaatgcatcgtggcctgggcatatgcacttgaaagatccctgatt------