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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCTGCTGTCCGTAGACAGGCATCTTGTTCAGACCATTGTTCCTGGAACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAAgtatgttggatctaaaacatctgctcagtttgtttccattttgttgagctagactacttgcatagctgatgacgctcaaatattcattttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g55410.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g55410.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G075978_T01 (Zea mays), 5'ss of exon 6
ATATGCTGCTGTCCGTAGACAGGCATCTTGTTCAGACCATTGTTCCTGGAACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAAgtatgttggatctaaaacatctgctcagtttgtttccattttgttgagctagactacttgcatagctgatgacgct-caaatattcattttgcag
|| ||||||| || ||||| ||||| || |||||||| |||||||| || ||||||||||||||  |||| |||||||| || |||||||||||  ||| ||||| || ||||| ||  | |      |||||||  |||    ||| || | | |  | |||   | || | ||     | |  ||||||||||
ATGTGCTGCTTTCTGTAGATAGGCACCTAGTTCAGACTATTGTTCCAGGGACTAGATTAACTGTTGTTGGCATCTACAGCGTGTACCAAGCATCCACAACgtatgatgaatctagaagttgt------tttgtttttattagtctgaacttggccatgtacatgattaataatgccattgaaaaacattttgcag

upper sequence: LOC_Os02g55410.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G450055_T01 (Zea mays), 5'ss of exon 6
ATATGCTGCTGTCCGTAGACAGGCATCTTGTTCAGACCATTGTTCCTGGAACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAAgtatgttggatctaaaacatctgctcagtttgtttccattttgttgagctagactacttgcatagctgatgacgct-caaatattcattttgcag
|||||||||| || ||||| || || || |||||||| || ||||| || || |||||||||||  |||| |||||||| || |||||||| ||  ||| ||||| |  ||||||||   ||  |  |||| ||   | | |   || || | | |    |||   | || | ||     |    ||||||||||
ATATGCTGCTTTCTGTAGATAGACACCTAGTTCAGACTATCGTTCCAGGGACCAGATTAACTGTCGTTGGCATCTACAGCGTGTACCAAGCTTCCACAACgtatgattaatctaaaaa--ctatttcgtttcttgttaatct---gaacttggccaagcacatgattaataatgccattgaagaacattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58681178|gb|CK069865.1|CK069865
EST:     ACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAA                         TCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTT
genomic: ACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAAgtatgttgga ... cattttgcagCCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTT
EST: gi|58671106|gb|CK059792.1|CK059792
EST:     ACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAA                         TCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTT
genomic: ACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAAgtatgttgga ... cattttgcagCCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTT
EST: gi|58679471|gb|CK068158.1|CK068158
EST:     ACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAA                         TCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTT
genomic: ACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAAgtatgttgga ... cattttgcagCCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTT