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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATCATTCAGTTGCTGTTTCACCTATCGTGCTTGCTAGTTGTGACATAGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagtttttgctcgtataatggtaaactaattgtggtgcaatgtactgttgtggtgttgcctgtcttattagagcatttttacttgaaaatttattaacatttcgcatgaatcttcag

Basic information

species Oryza sativa
transcript LOC_Os02g52810.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58601551|gb|CK012079.1|CK012079
EST:     AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
genomic: AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
EST: gi|163929105|gb|EG713026.1|EG713026
EST:     AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAG
genomic: AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAG
EST: gi|29674430|gb|CB670705.1|CB670705
EST:     AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
genomic: AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
EST: gi|38476255|gb|CF960388.1|CF960388
EST:     AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
genomic: AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
EST: gi|88271447|gb|CI387500.1|CI387500
EST:     TACCTTTTTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
genomic: TACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
EST: gi|66914813|gb|CX101661.1|CX101661
EST:     AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
genomic: AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
EST: gi|163928622|gb|EG711183.1|EG711183
EST:     AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTG                         GACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA
genomic: AGTTGGTACCGTGGGCGTAGCAATGGATGTACCTTTGTAGAAACTTTTTGgtgagttttt ... gaatcttcagGACGTTGCAGCTCATGTCAGCCAACAAATCAGAATTAATCAGGAAGTCAGA