1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCGGAAGCTATGTATGCAGATCTTGGACATTTCTCACAATCGTCAATTAAGgtattagatttgagatgaacatgttacgatatactccctccatcccacaaaaaaaccaaccatcccctcctagtgcaacgaatctggacaaaaggggtta...
species | Oryza sativa |
transcript | LOC_Os02g49760.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGAAGCTATGTATGCAGATCTTGGACATTTCTCACAATCGTCAATTAAG ATTGCGTTCATGTCTGTGGTTTATCCAGCTCTAGTTCTTGCTTACATGGGGEST: gi|58669182|gb|CK057868.1|CK057868
genomic: CGGAAGCTATGTATGCAGATCTTGGACATTTCTCACAATCGTCAATTAAGgtattagatt ... cttccaacagATTGCGTTCATGTCTGTGGTTTATCCAGCTCTAGTTCTTGCTTACATGGGG
EST: CGGAAGCTATGTATGCAGATCTTGGACATTTCTCACAATCGTCAATTAAG ATTGCGTTCATGTCTGTGGTTTATCCAGCTCTAGTTCTTGCTTACATGGGG
genomic: CGGAAGCTATGTATGCAGATCTTGGACATTTCTCACAATCGTCAATTAAGgtattagatt ... cttccaacagATTGCGTTCATGTCTGTGGTTTATCCAGCTCTAGTTCTTGCTTACATGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGGAAGCTATGTATGCAGATCTTGGACATTTCTCACAATCGTCAATTAAGgtattagatttgagatgaacatgttacgatatactccctccatcccacaaaaaaaccaaccatcccctcctagtgcaacgaatctggacaaaaggggtta
- - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc