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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACATCTACAACTGTTCCGGATACACTATCTCCTCGTTTTGGCACTGCTGACAACGCACTGACCGAGTGGGAATTTCAACCAGCTTACTACTATCAGgttcaacctctccctacacagcactacaacagaggatatttcattccttttacttgaccacactagtgatctttttatgatgccttcccttctggcag

Basic information

species Oryza sativa
transcript LOC_Os02g48380.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g48380.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G104714_T01 (Zea mays), 5'ss of exon 2
AACAACATCTACAACTGTTCCGGATACACTATCTCCTCGTTTTGGCACTGCTGACAACGCACTGACCGAGTGGGAATTTCAACCAGCTTACTACTATCAGgttcaacctc--tccctacacagcactacaacagaggatatttcattccttttacttgaccacactagtgatctttttatgatgccttcccttctggcag
||||||||| |||||| |||| ||||||||||||||||| ||||||||||| |||||| || | || |||||||||||||| ||||| |||||||||||||||||| ||   |   | ||||||||||  | ||         || ||| |||||| ||   |||||   ||    || | || | ||  |||||  |||
AACAACATCCACAACTATTCCAGATACACTATCTCCTCGATTTGGCACTGCAGACAACACATTTACTGAGTGGGAATTTCAGCCAGCATACTACTATCAGgttcaatctacatttttgcacagcactatgatagg--------cactccatttactggattgcactaacaattgacttctcatacattttcttctaacag

upper sequence: LOC_Os02g48380.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G456238_T01 (Zea mays), 5'ss of exon 6
AACAACATCTACAACTGTTCCGGATACACTATCTCCTCGTTTTGGCACTGCTGACAACGCACTGACCGAGTGGGAATTTCAACCAGCTTACTACTATCAGgttcaacctc--tccctacacagcactacaacagaggatatttcattccttttacttgaccacactagtgatctttttatgatgccttcccttctggcag
||||||||| |||||| |||| ||||||||||||||||| ||||||||||| |||||| || |||| |||||||||||||| ||||| |||||||||||||||||| ||   ||  | ||||||||||  | ||         || ||| |||||| ||   |||||   ||    || | || | ||  |||||  |||
AACAACATCCACAACTATTCCAGATACACTATCTCCTCGATTTGGCACTGCAGACAACACATTGACTGAGTGGGAATTTCAGCCAGCATACTACTATCAGgttcaatctacatctttgcacagcactatgatagg--------cactccatttactggattgcactaacaattgacttctcatacattttcttctaacag

upper sequence: LOC_Os02g48380.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G065044_T02 (Zea mays), 5'ss of exon 5
AACAACATCTACAACTGTTCCGGATACACTATCTCCTCGTTTTGGCACTGCTGACAACGCACTGACCGAGTGGGAATTTCAACCAGCTTACTACTATCAGgttcaacctc--tccctacacagcactacaacagaggatatttcattccttttacttgaccacactagtgatctttttatgatgccttcccttctggcag
|||||||||||||||| |||| |||||| |||||||| | ||||||||||| ||| | | | |||| |||||||||||||| ||||| |||||||||||||||||||||   ||  | ||||||||||| | |||        || ||| |||||| ||   || ||   ||    || | || | ||   ||||| |||
AACAACATCTACAACTATTCCAGATACATTATCTCCTAGATTTGGCACTGCAGACTATGGATTGACTGAGTGGGAATTTCAGCCAGCATACTACTATCAGgttcaacctacatctttgcacagcactacgataga--------cactccgtttactcgattgcagtaacaattgacttctcatacatttt-ttctgacag

upper sequence: LOC_Os02g48380.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G124396_T01 (Zea mays), 5'ss of exon 5
AACAACATCTACAACTGTTCCGGATACACTATCTCCTCGTTTTGGCACTGCTGACAA--CGCACTGACCGAGTGGGAAT--TTCAACCAGC--TTACTACTATCAGgttcaacctctccctacacag--cactacaacagaggatatttcattccttttacttgaccacactagtgatctttttatgatgccttcccttctggcag-
   | ||   |||   |||||| |  || ||||     | | ||     | ||  ||   ||  |     | |||||||  || | |  ||  || ||  | |  |||  | |   |    |||     ||| || |     ||||    ||  | |  | ||| |    |     |    ||||    |       ||| | ||| 
---AGCAATCACA-TGGTTCCGTAAGCA-TATCAAAA-GCTATGAACGGGTTGTTAAGTTGCTTTTCTTCACTGGGAATGGTTTAGCAGGCAGTTCCTTGTCTTTGgtg-agctgatagaaacaacatccacaactattccagatacactatctcctcgatttggcactgcagacaacacatttactgagtgggaatttcagccagc