1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACATCCAACTGGCGATGCACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATATgtaagtattgtcacctgatacattgctctctatgtccgacaaacaacaaaagcaacaataaacaccatcaatttgctttatatgcag
species | Oryza sativa |
transcript | LOC_Os02g47850.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATAT ATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTCEST: gi|29682715|gb|CB678990.1|CB678990
genomic: CACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATATgtaagtattg ... ttatatgcagATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTC
EST: CACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATAT ATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTCEST: gi|218483317|gb|FG958109.1|FG958109
genomic: CACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATATgtaagtattg ... ttatatgcagATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTC
EST: CACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATAT ATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTC
genomic: CACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATATgtaagtattg ... ttatatgcagATGATGTGGACACACGCGCCATAACACGGAGATTACGAGAAGATGGTAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATCCAACTGGCGATGCACAGAAACACTTGAAGAGTATCTGATGAAGAGAAACATTATGGGAATATgtaagtattgtcacctgatacattgctctctatgtccgacaaacaacaaaagcaacaataaacaccatcaatttgctttatatgcag
- - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA