1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAAATTGCAGAATATTATGAGAACTATTACACTTCAAAAGGTGTTACCTTTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAGgtgagtttctgtcccaacacaagtttggactccttgcagtataacaagtactttgtataacaagtactccctctgatttccaaatgcaaatcgttatata...
species | Oryza sativa |
transcript | LOC_Os02g47800.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGGAG GTGACTTCAGTAATCCTGAAAGATGGTAAACCCCTTCCTGCCGATATGGTTEST: gi|84117206|gb|CD150973.1|CD150973
genomic: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAGgtgagtttct ... gtatacacagGTGACTTCAGTAATCCTGAAAGATGGTAAACACCTTCCTGCCGATATGGTT
EST: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAG GTGACTTCAGTAATTCTGAAAGATGGTAAACACCEST: gi|66916761|gb|CX103609.1|CX103609
genomic: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAGgtgagtttct ... gtatacacagGTGACTTCAGTAATCCTGAAAGATGGTAAACACC
EST: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAG GTGACTTCAGTAATCCTGAAAGATGGTAAACACCTTCCTGCCGATATGGTTEST: gi|29638189|gb|CB643198.1|CB643198
genomic: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAGgtgagtttct ... gtatacacagGTGACTTCAGTAATCCTGAAAGATGGTAAACACCTTCCTGCCGATATGGTT
EST: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAG GTGACTTCAGTAATCCTGAAAGATGGTAAACACCTTCCTGCCGATATGGTT
genomic: TTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAGgtgagtttct ... gtatacacagGTGACTTCAGTAATCCTGAAAGATGGTAAACACCTTCCTGCCGATATGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATTGCAGAATATTATGAGAACTATTACACTTCAAAAGGTGTTACCTTTGTCAAAGGAACTGTGCTTACATCCTTTGAAAAAGATTCGACAGGGAAGgtgagtttctgtcccaacacaagtttggactccttgcagtataacaagtactttgtataacaagtactccctctgatttccaaatgcaaatcgttatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc