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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtctcatctcaaatcagcacttgatttgttcactgtttgcatgctattaatccatccacgctatatctttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g47410.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47410.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G849796_T01 (Zea mays), 5'ss of exon 6
ATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtctcatctcaa-atcagcacttgatttgttcactgtttgcatgctattaatccatccacgctatatctttgcag
||| |||||||  || || ||||||| || ||||||||||||||||||||||||||||| ||||| || || ||| |||||| || |||||  || |||||   ||||   |  ||||  ||| |   || |  ||| | |   |    || || |  ||| |||
ATACTGGATGCCCTGATTATCATGAAAGATGCTGGCATTATTCATTGTGATCTAAAACCAGAAAACATCCTTATAGCTCCAACgtgagttgattcttctcactgtcagtgttgaatttcatcaat-cctgtagcctaatgactaa---gcggta-acttttacag

upper sequence: LOC_Os02g47410.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 8
ATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtctcatctcaaatcagcacttgatttgttcactgtttgcat--gctattaatccatccacgctatatctttgcag-----------------------
|| ||  ||| | ||| | |  | || || ||||||||||||||||||||||| || || ||||| |||||  ||  | | | ||| ||| ||| |  | ||    |  ||    |     ||||| ||||   ||||||     |   |    | | || |  ||                       
ATTTTATATGGACTGGCTCTACTAAAAGAGGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGgttggtt-tcttacatgaag---gtgctca--taaagaactgtatgcagtagctattttcttaaggatttaacacctctaaagtgagggtgagggattcactttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58607868|gb|CK035901.1|CK035901
EST:     GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAA                         TGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
genomic: GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtc ... atctttgcagTGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
EST: gi|29638402|gb|CB643411.1|CB643411
EST:     GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAA                         TGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
genomic: GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtc ... atctttgcagTGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
EST: gi|58673354|gb|CK062040.1|CK062040
EST:     GGCATTATTCATTGTGATCTAAAAGCGGAAAATATTCTCATAACTCCCAA                         TGT-AAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
genomic: GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtc ... atctttgcagTGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
EST: gi|58610888|gb|CK038600.1|CK038600
EST:     GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAA                         TGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
genomic: GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtc ... atctttgcagTGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTT
EST: gi|58666776|gb|CK055462.1|CK055462
EST:     GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAA                         TGTAAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTCGGATCAGCATGCT
genomic: GGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAAgttagttgtc ... atctttgcagTGTAAAAA-CAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCT