1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaactgaaagatgtaccctctttcctgctatgaaccttcaactgatatttctcctatattgaag
species | Oryza sativa |
transcript | LOC_Os02g47220.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|58662505|gb|CK051191.1|CK051191
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|58660884|gb|CK049564.1|CK049564
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: GAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAGAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATEST: gi|2317408|gb|C22462.1|C22462
genomic: GAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGA-AGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTAT
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|218482677|gb|FG959726.1|FG959726
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: AGAGGAAATATTATTCTTATGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|88839102|gb|CI378026.1|CI378026
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|58664681|gb|CK053367.1|CK053367
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|58670491|gb|CK059177.1|CK059177
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATAEST: gi|58665074|gb|CK053760.1|CK053760
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
EST: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG TCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
genomic: AGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaac ... tatattgaagTCTTTGCGGCGCATGAATCACCCTAACATCGTGAAGCTCAAGGAGGTTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaactgaaagatgtaccctctttcctgctatgaaccttcaactgatatttctcctatattgaag
- - - - - - - - - AGAGGA