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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagttgtcttgctaagattattttgttttacttctgatgtttatctgaagtggctccttttgggtttgtag

Basic information

species Oryza sativa
transcript LOC_Os02g45480.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g45480.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G037200_T01 (Zea mays), 5'ss of exon 8
GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagttgtcttgctaagattattttg-----ttttacttctgatgt-ttatctgaagtggctccttttgggtttgtag
|| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||||||| ||| ||   |  || |||  ||||      ||||| || |    |  |||| | |||| ||| | || | ||| |||
GGTGCACTTGCCCTCAGTGGTATGCCTGACGCACAGTCAAAACCTGTGCTACTGTGTTCATTAAATGACAACACTGTCCGCTTATATGATCTGCCATCgtaagcaagctgcaatattatgatatttttaatatattttatttatacaatgctatcgggagtgactcttgtttgttttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675454|gb|CB671729.1|CB671729
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|218479278|gb|FG957154.1|FG957154
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|29618177|gb|CB623189.1|CB623189
EST:     CTACTATGTTCAATAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|86501745|gb|CI144378.1|CI144378
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|86501991|gb|CI144624.1|CI144624
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|86851536|gb|CI314119.1|CI314119
EST:     ACACTGTCCGACTATAT-ATCTGCCATC                         GTTCAGTGATA-GGCCA-GATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: ACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|29657539|gb|CB653814.1|CB653814
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|33794977|gb|CF323368.1|CF323368
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
EST: gi|58674413|gb|CK063099.1|CK063099
EST:     CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC                         GTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA
genomic: CTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATCgtaagaaagt ... gggtttgtagGTTCAGTGATAGGGGCAGGATATTCTCAAAACAGGAAATAAGGGCAATACA