1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAACAAAGTAGTCCAGCAGAAGAAGGTCTTGGAGGTTCATGTTGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtcttatttacataagtatcaggccgtcatgtgcgaaatgtggcaactcgcatcttgatgtgtgtgttcataatatgttggagctcccatctaacattgcaaattcatgcttttgcag
species | Oryza sativa |
transcript | LOC_Os02g43930.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|58661241|gb|CK049921.1|CK049921
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAEST: gi|29665502|gb|CB661777.1|CB661777
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTA
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|58677822|gb|CK066509.1|CK066509
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAGEST: gi|218503180|gb|FG945924.1|FG945924
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: AATGCAACATGGCCAAAAGATTGTATTCCAGGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|396941261|gb|HO188470.1|HO188470
genomic: AATGCAACATGGCCAAAAGATTGTATTCCA-GGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|58667485|gb|CK056171.1|CK056171
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|218484817|gb|FG946762.1|FG946762
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGTGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|33795096|gb|CF323421.1|CF323421
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|29686473|gb|CB682748.1|CB682748
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|29627564|gb|CB632575.1|CB632575
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GCTGATGAAGCT CTTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|58603501|gb|CK014029.1|CK014029
genomic: GCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: AATGCAACATGGCCAAAAGATTGTATTCCAGGGTTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|218485257|gb|FG950272.1|FG950272
genomic: AATGCAACATGGCCAAAAGATTGTATTCCAGGGT-GAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTATTGTCTTGCAACTTAAAGACCACEST: gi|29665503|gb|CB661778.1|CB661778
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|33797209|gb|CF324468.1|CF324468
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGEST: gi|218482248|gb|FG968976.1|FG968976
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGG
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|58604823|gb|CK015351.1|CK015351
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|3767212|gb|AU031322.1|AU031322
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|29686472|gb|CB682747.1|CB682747
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|116875639|gb|EC366147.1|EC366147
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|14571405|gb|BI118773.1|BI118773
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAATATGGCCAAAAGATTGCATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|29683463|gb|CB679738.1|CB679738
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|3763799|gb|AU030551.1|AU030551
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|218499207|gb|FG956931.1|FG956931
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCACEST: gi|29683464|gb|CB679739.1|CB679739
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
EST: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
genomic: GAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtctta ... gcttttgcagCCTGATACAGTGACAGGAGACATAGTTTTTGTCTTGCAACTTAAAGACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAAGTAGTCCAGCAGAAGAAGGTCTTGGAGGTTCATGTTGAGAAGGGAATGCAACATGGCCAAAAGATTGTATTCCAGGGTGAAGCTGATGAAGCTgtgagtcttatttacataagtatcaggccgtcatgtgcgaaatgtggcaactcgcatcttgatgtgtgtgttcataatatgttggagctcccatctaacattgcaaattcatgcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC