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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagatagctgcgtgataggggctcttttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt...

Basic information

species Oryza sativa
transcript LOC_Os02g42320.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G850355_T06 (Zea mays), 5'ss of exon 1
------------------------------TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctctt--ttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt
                              ||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||| |||||||||||| | ||   || | |  |||||   |        |  ||   |   ||||||||  |        ||| |   ||||||||     |   |   ||||   
AGTTTTACTTGTGATCCTTATTTGTTTCAGTGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaggaaacctgttta---ttgtctcacagggatcatcacaagtag-

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G824831_T01 (Zea mays), 5'ss of exon 9
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctcttttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt--
|||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||| ||| |||||||||||| | ||   |||| |  |||||   |   ||| |     |||  |   || |  | ||  ||        |  |     || | |||  | |    |    
TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaagaagctacaagatagaaacctgtttat----taaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaag

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G824831_T03 (Zea mays), 5'ss of exon 8
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctcttttttgttgcaactgtttcaaaattaatgtgtacgttg---acccttgtctcaataataagctgcaaagtgtt--------------------------------------------------------------------------------------------
|||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||| ||| |||||||||||| | ||   |||| |  |||||   | || |||  |  |         |||| |  |   | | ||        |  || |||  |  |  |  ||||||                                                                                              
TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaagaagctacaagatagaaac-ctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcag

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G085243_T01 (Zea mays), 5'ss of exon 8
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctctt--ttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt
||||||||||||||||||||||||  | |||||||| ||||| |||||||||||||||||| |||||||||||| | ||   || | |  |||||   |        |  ||   |   ||||||||  ||   | |   ||    ||||||||     |   |   ||||   
TGGTGTAAGACCATTTGGAGTATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaa--aaaaggaaacctgtttattgtctcacagggatcatcacaagta--

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G850355_T02 (Zea mays), 5'ss of exon 8
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctctt--ttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt
||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||| |||||||||||| | ||   || | |  |||||   |        |  ||   |   ||||||||  |        ||| |   ||||||||     |   |   ||||   
TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaggaaacctgttta---ttgtctcacagggatcatcacaagtag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88956166|gb|CI092454.1|CI092454
EST:     TATCATTATTGATTGCNGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88269320|gb|CI380618.1|CI380618
EST:     GATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: GATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|27554138|gb|CA998038.1|CA998038
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAT                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|27576119|gb|CA998813.1|CA998813
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88985654|gb|CI016363.1|CI016363
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|3766855|gb|AU030965.1|AU030965
EST:     TATCATTATTGATTGCCGGGTACGATGACANTGGCCCACAGCTGTATCAG                         GTTGANCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|163917780|gb|EG711302.1|EG711302
EST:     TGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGGTCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|89178076|gb|CI391255.1|CI391255
EST:     GATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: GATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|11414339|gb|AU165132.1|AU165132
EST:     TTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCTTGGAAAGCATCAGCTATGGGGAAA
genomic: TTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88239782|gb|CI238944.1|CI238944
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|89197813|gb|CI013803.1|CI013803
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86422896|gb|CI060469.1|CI060469
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|33661637|gb|CF292604.1|CF292604
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86844003|gb|CI336703.1|CI336703
EST:     CCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCA-GATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: CCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88977911|gb|CI384393.1|CI384393
EST:     CGATGACAATGGCCCACACCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: CGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88243911|gb|CI243033.1|CI243033
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86546047|gb|CI186253.1|CI186253
EST:     TATCAGTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86493119|gb|CI135752.1|CI135752
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88852675|gb|CI008868.1|CI008868
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|89197364|gb|CI009984.1|CI009984
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86509053|gb|CI151686.1|CI151686
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88965320|gb|CI009356.1|CI009356
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88995416|gb|CI036991.1|CI036991
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88236034|gb|CI235236.1|CI235236
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88221720|gb|CI221676.1|CI221676
EST:     ACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: ACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88252208|gb|CI350636.1|CI350636
EST:     TTGATTGCCGGGTACGATGACAATGGCCCACAACTGTATCAG                         GTTTATCCCTCAGGATCATAGTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|87032496|gb|CI266136.1|CI266136
EST:     TTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86494880|gb|CI137513.1|CI137513
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|87029179|gb|CI276447.1|CI276447
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88995615|gb|CI022938.1|CI022938
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86602433|gb|CI264761.1|CI264761
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|29613823|gb|CB618836.1|CB618836
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCGTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88201510|gb|CI201865.1|CI201865
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|86525993|gb|CI166199.1|CI166199
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|58586930|gb|CF985238.1|CF985238
EST:     TCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|396941624|gb|HO188281.1|HO188281
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88240749|gb|CI239911.1|CI239911
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|25797837|gb|CA753798.1|CA753798
EST:     TATCATTATTGATTGCCGGGTACGATGACNATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|33803410|gb|CF327579.1|CF327579
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|33655042|gb|CF277656.1|CF277656
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|5771116|gb|AU078005.1|AU078005
EST:     TTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|56550165|gb|CX056269.1|CX056269
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
EST: gi|88901506|gb|CI008934.1|CI008934
EST:     TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA
genomic: TATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat ... atttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagatagctgcgtgataggggctcttttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG