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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgtattattttgatgacctgtttcatattcataatatccagattaaaccatatttgccttagcattcatatcctatccatttggattccag

Basic information

species Oryza sativa
transcript LOC_Os02g40030.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 6
GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgtattattttgatgacctgtttca---------------tattcataatatccagattaaaccatatttgccttagcattcatatcctatccatttggattccag
||||||||||||| || |||||||| ||||||||||||||||| ||||||||| ||||  ||  |||                 | || ||       |  || |||    | |  ||||  ||   ||| |    | | |||||| |||
GAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATGgtattattctgattgcccttttttcttctcgaacactgttttttattgctcttaatttcaacttcttatatcttaagatct-tatacccctcttctggattacag

upper sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 6
GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgtattattttgatgacctgtttcatattc---ataatatccagatt------------aaaccatatttgccttagcattcatatcctat---ccatttggattccag
||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||  ||  |||    |     | | |||   ||||            | | || | || | |  |  || | ||| |||   |  |||||||| |||
GAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATGgtatcattttgattgcccttttttcttcttgaacactattttgattgctcttaacttcagatcaaactt-cttatgtcttaaaatcttatatcctgtttggatttcag

upper sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 6
GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgta---ttat--tttgatgacctgtttcatattcataatatccagattaaaccatatttgccttagcattcatatcctatccatttggattccag
| ||| |||||||||| |||||||| ||||| ||||||||||| ||||   ||||  ||||   |   |  |  ||  | ||   |    |||  | |  | ||  ||||   || | || || | |  ||  |||  ||
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatgatttgtataatggcctgttaaacttaccctttttattgtaacgaaatt-tctta--tttgaaatacttttctattttattatag

upper sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 6
GAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACGgta---ttattt------tgatgacctgtttcatattcataatatccagattaaaccatatttgccttagcattcatatcctatccatttggattccag
| ||| |||||||||| |||||||| ||||| ||||||||||| ||||   |||| |        ||| ||||||  |  ||| ||   |    |||  | || | |   ||||   || | || || | |  ||  |||  ||
GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttatatattgtacaatggcctgttaaactttcttaccctttttattgtaacagaat-atctta--tttgaaatacttttctattttattatag