1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCTTACCCAGATCTCATAGAGGCATTGCCCAAAAATTCTCTTCTTACTTCTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGGgtatgtttcttgtactttaaatagaaaaaaaatctcatgagtccttcatctagttctattttatttttacataatttgaataattagctggttatgttga...
species | Oryza sativa |
transcript | LOC_Os02g39570.5 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGG GGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATGAACCAAGTAEST: gi|58677682|gb|CK066369.1|CK066369
genomic: CTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGGgtatgtttct ... aattgttcagGGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATGAACCAAGTA
EST: CTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGG GGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATGEST: gi|33682200|gb|CF310439.1|CF310439
genomic: CTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGGgtatgtttct ... aattgttcagGGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATG
EST: CTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGG GGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATGAACCAAGTA
genomic: CTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGGgtatgtttct ... aattgttcagGGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATGAACCAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTACCCAGATCTCATAGAGGCATTGCCCAAAAATTCTCTTCTTACTTCTGTAAATAAGACAGTCAATGGAAGTTTTGATCAACCATCCAATGCTGGGgtatgtttcttgtactttaaatagaaaaaaaatctcatgagtccttcatctagttctattttatttttacataatttgaataattagctggttatgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa