1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGgtatacttacggtttcttctacctttttctcaagtggactttggggctgtttggtttgttgccgtttgtaaccataccagctttagcggtgccaaaatca...
species | Oryza sativa |
transcript | LOC_Os02g38060.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTTTCCCTTGTTTCGAAG GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGEST: gi|58591638|gb|CF989946.1|CF989946
genomic: GTTTTCCCTTGTTTCGAAGgtatacttac ... ctttctgtagGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG
EST: ATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAG GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGEST: gi|88215537|gb|CI215386.1|CI215386
genomic: ATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGgtatacttac ... ctttctgtagGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGG
EST: ATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAG GATGCGAAAAACGAAATGTTCATTCTGTTCCATTTCCGGAAAAAG
genomic: ATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGgtatacttac ... ctttctgtagGATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAAGTGAGGAGTAGGCTAGACCCAAACACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTGTTTCGAAGgtatacttacggtttcttctacctttttctcaagtggactttggggctgtttggtttgttgccgtttgtaaccataccagctttagcggtgccaaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT