1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagttttgagatcgaacttgctgtgtag
species | Oryza sativa |
transcript | LOC_Os02g37870.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88563872|gb|CI494589.1|CI494589
genomic: GGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88850020|gb|CI091315.1|CI091315
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86598853|gb|CI355470.1|CI355470
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88481541|gb|CI418812.1|CI418812
genomic: GTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATGACACTTGTTGAG GTTGG-CCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|87013802|gb|CI269301.1|CI269301
genomic: AGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88288002|gb|CI512679.1|CI512679
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGGTCTGGACGAGATGACACTTGTTGGG GTTGGCCCAAGGTTCTGTTTGAACCCAATCGAAATATTTGGCGGTAGTTTCEST: gi|88903030|gb|CI088568.1|CI088568
genomic: AGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTAGCGGTAGTTTCEST: gi|88563311|gb|CI494028.1|CI494028
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88270082|gb|CI381380.1|CI381380
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGGTCTGGACAAGATGACACTTGTTGAG GTTTGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88293608|gb|CI505525.1|CI505525
genomic: AGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88241455|gb|CI241304.1|CI241304
genomic: GATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86545913|gb|CI186119.1|CI186119
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88566714|gb|CI497431.1|CI497431
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GGTCTGGACAAGATGACACTTGTTGAG GTGGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|89180088|gb|CI044367.1|CI044367
genomic: GGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86828209|gb|CI276815.1|CI276815
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88849106|gb|CI087628.1|CI087628
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88220331|gb|CI219891.1|CI219891
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88285753|gb|CI510013.1|CI510013
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTNACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88565137|gb|CI495854.1|CI495854
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGNCGGTAGTTTCEST: gi|88565030|gb|CI495747.1|CI495747
genomic: GGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88990125|gb|CI107566.1|CI107566
genomic: GGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88239196|gb|CI240358.1|CI240358
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|66915129|gb|CX101977.1|CX101977
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGTTCTGGACAAGATGACACTTGTTGAG GTTGGCCACAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTEST: gi|25806580|gb|CA762541.1|CA762541
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCC-CAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTT
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTTEST: gi|88202662|gb|CI201017.1|CI201017
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTGGGCGGTAGTTTCEST: gi|86544749|gb|CI184955.1|CI184955
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCGAAATATTTGGCGGTAGTTTCEST: gi|86431994|gb|CI085605.1|CI085605
genomic: GATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88318881|gb|CI510676.1|CI510676
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88318789|gb|CI508385.1|CI508385
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GATTGACAAGGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86855222|gb|CI265148.1|CI265148
genomic: GATTGACAA-GGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88563953|gb|CI494670.1|CI494670
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88489482|gb|CI426754.1|CI426754
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGG-CCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|27577569|gb|CB000264.1|CB000264
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88434983|gb|CI504325.1|CI504325
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: ACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86412482|gb|CI017350.1|CI017350
genomic: ACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88288065|gb|CI512742.1|CI512742
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88287825|gb|CI510105.1|CI510105
genomic: AAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GACAAGGGTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|87036060|gb|CI189507.1|CI189507
genomic: GACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86545215|gb|CI185421.1|CI185421
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88568831|gb|CI499548.1|CI499548
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: GTTGATAAAGGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88981009|gb|CI021136.1|CI021136
genomic: GTTGATAAA-GGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTCCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|88565167|gb|CI495884.1|CI495884
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: CTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCEST: gi|86545709|gb|CI185915.1|CI185915
genomic: CTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagttttgagatcgaacttgctgtgtag
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG