Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagttttgagatcgaacttgctgtgtag

Basic information

species Oryza sativa
transcript LOC_Os02g37870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G160458_T01 (Zea mays), 5'ss of exon 6
ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagtt-----ttgagatcgaacttgctgtgtag
||||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| |||||||||  || |  ||||||| | || |||      |    || |||| ||||| || | | |      ||| | | ||     || |||||
ATTTCGGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTCTGGATAAAATGACACTTATTGAGgtaactgcactgagcttctttatggata-----ctcaggtgcttcccagttttgtataaataataaattgtgctggattgctctttgtag

upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G168176_T01 (Zea mays), 5'ss of exon 6
ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagt-----tttgagatcgaact-tgctgtgtag
|||||||||||||||||||||||||| || ||||||||||| ||| |||| || ||||||||| |||||||||  ||    ||||||||| || |||     ||| | || |||| ||||| || | | |     |||| | | | | |   || | |||
ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcattgagcttctatatggata----ctttatgtgcttcctagttttgtctaaataataatttgtgcttggattgctctatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88546109|gb|CI475718.1|CI475718
EST:     GGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88563872|gb|CI494589.1|CI494589
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88850020|gb|CI091315.1|CI091315
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86598853|gb|CI355470.1|CI355470
EST:     GTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88481541|gb|CI418812.1|CI418812
EST:     AGATGACACTTGTTGAG                         GTTGG-CCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|87013802|gb|CI269301.1|CI269301
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88288002|gb|CI512679.1|CI512679
EST:     AGGTCTGGACGAGATGACACTTGTTGGG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCGAAATATTTGGCGGTAGTTTC
genomic: AGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88903030|gb|CI088568.1|CI088568
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTAGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88563311|gb|CI494028.1|CI494028
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88270082|gb|CI381380.1|CI381380
EST:     AGGTCTGGACAAGATGACACTTGTTGAG                         GTTTGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88293608|gb|CI505525.1|CI505525
EST:     GATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88241455|gb|CI241304.1|CI241304
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86545913|gb|CI186119.1|CI186119
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88566714|gb|CI497431.1|CI497431
EST:     GGTCTGGACAAGATGACACTTGTTGAG                         GTGGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|89180088|gb|CI044367.1|CI044367
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86828209|gb|CI276815.1|CI276815
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88849106|gb|CI087628.1|CI087628
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88220331|gb|CI219891.1|CI219891
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88285753|gb|CI510013.1|CI510013
EST:     AGATTNACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88565137|gb|CI495854.1|CI495854
EST:     GGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGNCGGTAGTTTC
genomic: GGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88565030|gb|CI495747.1|CI495747
EST:     GGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88990125|gb|CI107566.1|CI107566
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88239196|gb|CI240358.1|CI240358
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|66915129|gb|CX101977.1|CX101977
EST:     AGATTGACAAGGTTGATAAAGGAGTTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCACAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTT
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCC-CAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTT
EST: gi|25806580|gb|CA762541.1|CA762541
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTT
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88202662|gb|CI201017.1|CI201017
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTGGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86544749|gb|CI184955.1|CI184955
EST:     GATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCGAAATATTTGGCGGTAGTTTC
genomic: GATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86431994|gb|CI085605.1|CI085605
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88318881|gb|CI510676.1|CI510676
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88318789|gb|CI508385.1|CI508385
EST:     GATTGACAAGGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GATTGACAA-GGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86855222|gb|CI265148.1|CI265148
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88563953|gb|CI494670.1|CI494670
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88489482|gb|CI426754.1|CI426754
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGG-CCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|27577569|gb|CB000264.1|CB000264
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88434983|gb|CI504325.1|CI504325
EST:     ACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: ACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86412482|gb|CI017350.1|CI017350
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88288065|gb|CI512742.1|CI512742
EST:     AAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88287825|gb|CI510105.1|CI510105
EST:     GACAAGGGTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|87036060|gb|CI189507.1|CI189507
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86545215|gb|CI185421.1|CI185421
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88568831|gb|CI499548.1|CI499548
EST:     GTTGATAAAGGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: GTTGATAAA-GGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88981009|gb|CI021136.1|CI021136
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTCCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|88565167|gb|CI495884.1|CI495884
EST:     CTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: CTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
EST: gi|86545709|gb|CI185915.1|CI185915
EST:     AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAG                         GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC
genomic: AGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 61 (downstream exon)
Score: 8

ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgc ... tgctgtgtagGTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagttttgagatcgaacttgctgtgtag

- - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG