1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTAGTGGCATTGCGGTGTGTAGACCCAGATGCTCGTAAGAGGCCAAAGATCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaatagaagtacatatccacctgtttttccagtacttgcctttaattttgggtgaccaatccctgttaacgtttcatcaccaagcttgcttaac...
species | Oryza sativa |
transcript | LOC_Os02g34430.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGAT GAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGEST: gi|86483336|gb|CI125969.1|CI125969
genomic: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaat ... gtgatttcagGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
EST: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGAT GAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGEST: gi|86596893|gb|CI270689.1|CI270689
genomic: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaat ... gtgatttcagGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
EST: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGAT GAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGEST: gi|88222648|gb|CI222604.1|CI222604
genomic: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaat ... gtgatttcagGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
EST: ATGATTTCCCGTATAGAGAT GAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGEST: gi|87018547|gb|CI252301.1|CI252301
genomic: ATGATTTCCCGTATAGAGATgtaagtcaat ... gtgatttcagGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
EST: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGAT GAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCGEST: gi|88221781|gb|CI221737.1|CI221737
genomic: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaat ... gtgatttcagGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
EST: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGAT GAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
genomic: TCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaat ... gtgatttcagGAACGACGAGGCGCTCGAGCTCCGGTGCAGGCAAGAGTGGCTGACAAACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGTGGCATTGCGGTGTGTAGACCCAGATGCTCGTAAGAGGCCAAAGATCGGCCATGTCATTCACATGCTTGAAGTTGATGATTTCCCGTATAGAGATgtaagtcaatagaagtacatatccacctgtttttccagtacttgcctttaattttgggtgaccaatccctgttaacgtttcatcaccaagcttgcttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG