1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGCGAGGACTCACAAGAAGTCCAATCTACCGCCAAGAAACTGAACCTGAATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatcactcaagaaaaacagtgtgctctcaggttccatatcatttcatcatctgtgtttaccttttggtgatcactgatccagctgcctttcttttgtgctactttcag
species | Oryza sativa |
transcript | LOC_Os02g33580.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAACEST: gi|29673409|gb|CB669684.1|CB669684
genomic: ACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAAC
EST: GGACCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAACEST: gi|218505479|gb|FG952711.1|FG952711
genomic: GGACCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAAC
EST: CCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAACEST: gi|29678872|gb|CB675147.1|CB675147
genomic: CCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAAC
EST: AATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATNCA-CCCGAGCATCAGTGATGTCCTGTGCACAGCAAEST: gi|29678873|gb|CB675148.1|CB675148
genomic: AATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCAT-CAACCCGAGCATCAGTGATGTCCTGTGCACAGCAA
EST: TTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAACEST: gi|29678870|gb|CB675145.1|CB675145
genomic: TTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCATCAACCCGAGCATCAGTGATGTCCTGTGCACAGCAAC
EST: AATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATNCA-CCCGAGCATCAGTGATGTCCTGTGCACAGCAAEST: gi|11442630|gb|BF430533.1|BF430533
genomic: AATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCAT-CAACCCGAGCATCAGTGATGTCCTGTGCACAGCAA
EST: AATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGG GTACAAGGTATTCATCA
genomic: AATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatca ... ctactttcagGTACAAGGTATTCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCGAGGACTCACAAGAAGTCCAATCTACCGCCAAGAAACTGAACCTGAATCTAAACTTTTTTAAGGGAAGGGACCATGCAGATGACTCACTCCATGGgtatgtatcactcaagaaaaacagtgtgctctcaggttccatatcatttcatcatctgtgtttaccttttggtgatcactgatccagctgcctttcttttgtgctactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG