1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGTATAATGTTCTAGACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgattggtattctggtttttctgttataatatcgttaaagaacttggcatttaagtttaattatctgctgacag
species | Oryza sativa |
transcript | LOC_Os02g33230.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAG GTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATTEST: gi|58694686|gb|CK083373.1|CK083373
genomic: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgat ... ctgctgacagGTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATT
EST: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAG GTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATTEST: gi|29660002|gb|CB656277.1|CB656277
genomic: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgat ... ctgctgacagGTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATT
EST: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAG GTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATTEST: gi|40486326|gb|BX897909.1|BX897909
genomic: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgat ... ctgctgacagGTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATT
EST: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAG GTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATTEST: gi|29677033|gb|CB673308.1|CB673308
genomic: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgat ... ctgctgacagGTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATT
EST: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAG GTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATT
genomic: ACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgat ... ctgctgacagGTCTCTGATATTATATCGAAAGAGTTCGCTGGTCATCCTAAGATCTATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTCGACCTTGCCAGGCAGCTCATAGCTTCTACGTATAATGTTCTAGACAGCTGTGGGAGTGTGAGAGTTTCATTTTCCAGGAGAACACCGCGAAAGgtaggacgattggtattctggtttttctgttataatatcgttaaagaacttggcatttaagtttaattatctgctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA