1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTCTATCCAACTGCAATTGGTTCTGAGCCCCAGGATAATAACCTAGATTCCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctatttgttttgttataccttatgttttatcagctactcagctttattgagaaatcaaatatatacctatttttatttacgatccttcggtagtttctgatcattctggatccataccaatcatgcag
species | Oryza sativa |
transcript | LOC_Os02g33080.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|226698500|gb|GO497078.1|GO497078
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|29667322|gb|CB663597.1|CB663597
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|66923772|gb|CX110620.1|CX110620
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: ACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|29639686|gb|CB644695.1|CB644695
genomic: ACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|4715119|gb|AU056236.1|AU056236
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|55410603|gb|CV722979.1|CV722979
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|29671593|gb|CB667868.1|CB667868
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGEST: gi|88440825|gb|CI693394.1|CI693394
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
EST: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTG GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
genomic: CCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctat ... aatcatgcagGTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTATCCAACTGCAATTGGTTCTGAGCCCCAGGATAATAACCTAGATTCCCGAGAACACTGGAAGCGCGTCATGCAAGGACATGCTGGTGCTAACCTGgtactgctatttgttttgttataccttatgttttatcagctactcagctttattgagaaatcaaatatatacctatttttatttacgatccttcggtagtttctgatcattctggatccataccaatcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG