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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCAGCATTAGTAGGTGACTTCAACAATTGGAATCCAAATGCAGACCGCATGAGCAAAgtaagcccacaggctcacaaatatgcccttcctttcttcaaaaatattttgtttacatttctttaactaatttatttggttatagcattggtttcatcta...

Basic information

species Oryza sativa
transcript LOC_Os02g32660.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 6
TCTGCAGCATTAGTAGGTGACTTCAACAATTGGAATCCAAATGCAGACCGCATGAGCAAAgtaagcccacaggctca-caaatatgcccttcctttctt-caaaaatattttgtttacatttctttaactaatttatttggttatagcattggtttcatcta-
||||||||||| || |||||||||||||| ||| ||||||||||||| || |||||||||||| ||  |     |||  ||| ||    |   |  |||   | | |  ||||||||  | | ||| | ||| | | |   |  |    |   ||| ||| | 
TCTGCAGCATTGGTGGGTGACTTCAACAACTGGGATCCAAATGCAGATCGTATGAGCAAAgtatgcttatgccttcagtaaacattatatatttcacttattagattggtttgttta--tctttttcattaactcaatatat-gtgcactctatttaatcaac

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA03G35020.2 (Glycine max), 5'ss of exon 6
TCTGCAGCATTAGTAGGTGACTTCAACAATTGGAATCCAAATGCAGACCGCATGAGCAAAgtaagcccacaggctcacaaatatgcccttcctttcttcaaaaatattttgtttacatttctttaactaatt--tatttggttatagcattggtttcatcta
|| ||||||||| | || |||||||||||||||||||||||||||||    |||| ||| ||| |    |      |    | |    ||| |   |   ||| |        | | |||| ||||  |     ||| ||   |||    || |      | 
TCGGCAGCATTAATTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTAATGACCAAGgtatgttatccttactaggtctttaaagttcatacatgtgaaattcagcaaacttc-tttcattaagaagcccctatatgtgaatatttatgataatgatt-

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA19G37750.1 (Glycine max), 5'ss of exon 6
TCTGCAGCATTAGTAGGTGACTTCAACAATTGGAATCCAAATGCAGACCGCATGAGCAAAgtaagcccac---------------aggctcacaaatatgcccttc---------ctttcttcaaaaatattttgt-ttacatttctttaactaatttatttggttatagcattggtttcatcta-------------------------------------------------------------------------
|| ||||||||| | || |||||||||||||||||||||||||||||    |||| ||  ||| |    |               | | ||| | || ||   |||         ||||| | || ||    || | | | || |   |||  | || |     || | |  |    ||| |||                                                                          
TCAGCAGCATTAATTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTAATGACCAGGgtatgttatccttaattggtctttaaagttcatacatgtgaaattcagcatacttctttcattaataagcccttatatcatatgtaaataaaaagttgaacatattgtggtttcaacttcctcttttttcctctgtttgacaactgtaaatttttatcctattggcagtctttaaatgttctagttttgacttaacag