1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TATCGCCTGCAACAAACAGTGATTTTCAAGCTAACTTTTCACATCGTAGTCGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagcaggatcctccctaaaaattgttatagttatttccactttccatcatccaaagttgataatactgatgaatatttcag
species | Oryza sativa |
transcript | LOC_Os02g32610.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGACGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCEST: gi|29665412|gb|CB661687.1|CB661687
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCEST: gi|29664339|gb|CB660614.1|CB660614
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATCEST: gi|29675289|gb|CB671564.1|CB671564
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
EST: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAG TTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
genomic: CGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagc ... aatatttcagTTCTCCTGAGGATACACAATCTGCACAAAGTGACCCCTTCAGTGATATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCGCCTGCAACAAACAGTGATTTTCAAGCTAACTTTTCACATCGTAGTCGTGGTGCCCAGTCCAGTGGTCAAGATGGCAATTTTCTTATTCAGAAGAGgtgcatcagcaggatcctccctaaaaattgttatagttatttccactttccatcatccaaagttgataatactgatgaatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG