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CCAAAGGCTTGCCGCAGCAGCGGTTTCTACTGAAATTCCACCGGACAGGTTTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacatatcatgattcaaagtttttaatcctctttgcaaacaataattactatatttcataagttccttctgttctcttttgaactttcctctag
species | Oryza sativa |
transcript | LOC_Os02g32350.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|29674463|gb|CB670738.1|CB670738
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|29623577|gb|CB628588.1|CB628588
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|58607777|gb|CK035810.1|CK035810
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|58670976|gb|CK059662.1|CK059662
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAAEST: gi|29625604|gb|CB630615.1|CB630615
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|29656202|gb|CB652477.1|CB652477
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|29644258|gb|CB649265.1|CB649265
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGGGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCAEST: gi|29623984|gb|CB628995.1|CB628995
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
EST: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGAT GTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
genomic: TTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacata ... tttcctctagGTGCGAATTGTGGTGGAAGGCACAGATAGTTTCAGCAATATAATTGGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGGCTTGCCGCAGCAGCGGTTTCTACTGAAATTCCACCGGACAGGTTTGGAATAGAAGCTAAGCACTTCACAGAGACACGGGTTCTCAATAGAGATgtaagacatatcatgattcaaagtttttaatcctctttgcaaacaataattactatatttcataagttccttctgttctcttttgaactttcctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC