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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagttaatccatacatcattagtcattctgtctgtatatagccctaaaataagtttgatttcaaatttcagttggttcttccattgttatttaatt...

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G477146_T02 (Zea mays), 5'ss of exon 6
AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagttaatccatacatcattagtcattctgtctgtatatagccctaaaataagtttgatttcaaatttcagttggttcttccattgttatttaatt
|||||||||||| ||||| |||||||| |||||||| |||||| |||| ||||| || || |||||||| || |||||| |||      || |  |   |  ||| ||| | |   |    |  |  ||    ||   | | | |  | ||   |  ||               
AGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGgtatgggttgcaatgtagag-acgtgcaattttgtttcttcttgtttcctatgtagtcgtg--ctgatactaaaattatgttgtcag-------------

upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G144254_T06 (Zea mays), 5'ss of exon 5
AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagttaatccatacatcattagtcattctgtctgtatatagccctaaaataagtttgatttcaaatttcag----ttggttcttccattgttatttaatt-------------------------------
|||||||||||| ||||||||||| || |||||||| |||||| |||| |||||||| || |||||||| || |||||| |||  |||||    ||||     | || | ||||  || |   |  |||  |   || || |  |        ||| || ||    || |    |  |                               
AGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTGgtatgggttgttccatttgccatt---tctactatatgta-gtatcagcagcatatttgcaatgtcgagatgtgcaattttgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcag

upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 3
--------------------------AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagttaatccatacatcattagtcattctgtctgtatatagccctaaaataagtttgatttcaaatttcag----ttggttcttccattgttatttaatt-------------------------------
                          |||||||||||| ||||||||||| || |||||||| |||||| |||| |||||||| || |||||||| || |||||| |||  |||||    ||||     | || | ||||  || |   |  |||  |   || || |  |        ||| || ||    || |    |  |                               
TATGAAGCTTCTGCTATTCTTTCCAGAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTGgtatgggttgttccatttgccatt---tctactatatgta-gtatcagcagcatatttgcaatgtcgagatgtgcaattttgttttttttcgtggtgcccatgtactcctgctgacactaaaattatcttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688305|gb|CK076992.1|CK076992
EST:     TGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG                         TTTACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTC
genomic: TGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAGgtatgagtta ... atttcaacagTTTACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTC