1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTAGAGAGAGGTCCTCACATGAGAGAGCTTGAAAAGCATGCTTCAAGAATAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAGgtaagcctctagtcactgggctttctggtccttcagtttagtaaaaatatgcatgttttcggatacaaacaccttctcgctaaaaagtaaataaatgttt...
species | Oryza sativa |
transcript | LOC_Os02g27950.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAG GAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAAEST: gi|58689025|gb|CK077712.1|CK077712
genomic: TAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAGgtaagcctct ... atatttgcagGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
EST: TAGCTAGAGAAATAGAGGGAGAAGAT-CAAAAGATATGCATCTTGCTGAG GAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAAEST: gi|56157273|gb|D39206.2|D39206
genomic: TAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAGgtaagcctct ... atatttgcagGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
EST: AGATACAAAAGATATGCATCTTGCTGAG GAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAAEST: gi|33675902|gb|CF304141.1|CF304141
genomic: AGATACAAAAGATATGCATCTTGCTGAGgtaagcctct ... atatttgcagGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
EST: TAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAG GAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAAEST: gi|428890|gb|D25046.1|D25046
genomic: TAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAGgtaagcctct ... atatttgcagGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
EST: AGATACAAAAGATATGCATCTTGCTGAG GAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAAEST: gi|2310139|gb|C26294.1|C26294
genomic: AGATACAAAAGATATGCATCTTGCTGAGgtaagcctct ... atatttgcagGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
EST: GAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAG GAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
genomic: GAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAGgtaagcctct ... atatttgcagGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGAGAGAGGTCCTCACATGAGAGAGCTTGAAAAGCATGCTTCAAGAATAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTGCTGAGgtaagcctctagtcactgggctttctggtccttcagtttagtaaaaatatgcatgttttcggatacaaacaccttctcgctaaaaagtaaataaatgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA