1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAAATAATTGGGGGAGTGAATGCTCCAACACCAGTCGGTGAACTAGGGATGAATCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAGgttaactatctatgttttagttcaaataagtatgcatagtagctgctaaattaaaatttttactccataatttatttgtagatctctcccttgtttatgt...
species | Oryza sativa |
transcript | LOC_Os02g27340.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAATCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTATGAGCAG ATTGATAGGGACATGCTCATGAGTGGEST: gi|29664829|gb|CB661104.1|CB661104
genomic: TGAATCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAGgttaactatc ... gatggtgcagATTGATAGGGACATGCTCATGAGTGG
EST: TCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAG ATTGATAGGGACATGCTCATGAGTGGATTCATCCAACCTATTCCTGATCTCEST: gi|29664828|gb|CB661103.1|CB661103
genomic: TCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAGgttaactatc ... gatggtgcagATTGATAGGGACATGCTCATGAGTGGATTCATCCAACCTATTCCTGATCTC
EST: TGAATCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAG ATTGATAGGGACATGCTCATGAGTGGATTCATCCAACCTATTCCTGATCTC
genomic: TGAATCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAGgttaactatc ... gatggtgcagATTGATAGGGACATGCTCATGAGTGGATTCATCCAACCTATTCCTGATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATAATTGGGGGAGTGAATGCTCCAACACCAGTCGGTGAACTAGGGATGAATCAAATGACTCAAGCGATTGATTTAATTGATGTTTCTTACGAGCAGgttaactatctatgttttagttcaaataagtatgcatagtagctgctaaattaaaatttttactccataatttatttgtagatctctcccttgtttatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc