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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatcttgtatatggaattgtctctgcattgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag

Basic information

species Oryza sativa
transcript LOC_Os02g20970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G156238_T02 (Zea mays), 5'ss of exon 6
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatcttgtatatggaattgtctctgcattgaattgtt-ctgcaattct-ttgagaacgtacttttggtgttttggatatggcag-------
||| |||||||||||||||||||||||||| |||||||| |||||  | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  ||   |||    || | || ||     |      || |   | ||||  | |||   | ||||| | ||| | ||  | |||   | ||||   ||    |        
AGTATGCTTTGTTGAGCCTCCATACTTCCAAATGACAGTGAAACCGCTGTTTGGTCATGGACTTGATGTAACTGAACTCCCAGGAATTTCTGGATGGCTTgtaagtcc-atctaatttagtttattgtttccgtctttcatttttttaattacatttgaatgtcattacaattttcttgggtactcagtttccttattttttttaaaaaaaaattcag

upper sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA19G22500.1 (Glycine max), 5'ss of exon 4
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatcttgtatatggaattgtctctgcattgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag
 || ||||||||||| |||||||| || || ||||| ||||||||  | |||| |  |||||||||||| | |||||||||| | ||| |||| ||||| |||||| |   |  |||     |  || |   | | | |  | |  | | ||| | |  ||||   | |||| | ||    | ||  |||  |                
CGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTATGTTTGCTTGTGGGCTTGATGTGATTGAACTTCCATGCATTGCTGGGTGGCTAgtaagtataccttgatt-----ttaggcaaaatctgtgttcattcttatttgc-tcgtgttgtaa-gtaatt-tgtgttgtcttatcttttatcag-------------

upper sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA15G39380.1 (Glycine max), 5'ss of exon 6
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatcttgtatatggaattgtctctgcattgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag
 || ||||||||||| |||||||| || || ||||| |||||||| || |||  ||||||||||||| | |||||||||||||| ||| |||| ||||| |||||| |   |  |||     |  || |   ||| | |  | || | | ||| |     |||   | |||| | ||  | | ||  |||  |                
TGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTTTGTTTACTCATGGGCTTGATATGACTGAACTTCCAGGCATTGCTGGGTGGCTAgtaagtataccttgatt-----ttaggcaaaatgtgtgttcatttttatttgc-tcatgctgtaa-gtaatt-tgtgttatcttatcttttatcag-------------

upper sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G33580.1 (Glycine max), 5'ss of exon 6
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatct-tgtatatggaattgtctctgca-ttgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag
 || ||||||||||| |||||||| || || ||||| ||||||||  | |||  ||||||||||||||| |||||||||||||| ||| |||| ||||| |||||| |   |  |||          | | | |  ||    |||  | | || | ||   |  | ||| ||    ||       |     || | ||||   |||  |||
TGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTATGTTTACTCATGGGCTTGATGTGACTGAACTTCCAGGCATTGCTGGGTGGCTAgtaagtataccttgattttaggcaaaatctgtgttcattcttaatgctttatgtaatttgctcatgctgtaagcaatttgtgttatctaaatgcttttttttttat--cag

upper sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 6
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccat---tcccatt--ctggtatcttgtatatggaattgtctctgcattgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag
 ||||||||||  ||||| ||||| || ||||||||||| || ||  | ||   |||||| |||||||| || ||||||||||| ||| |||||||||| |||| |  |||| |||   |   ||   ||||  ||||| || |   ||| ||||| | ||  |   |||| |   |  |||    | || |||||   | |||  ||      
GGTGTGCTTTGCAGAGCCACCATATTTTCAGATGACAGTGAAGCCTATCTTCACTCATGGACTTGATGTTACAGAACTTCCAGGGATTGCTGGATGGCTAgtaa-ttatatttcatatattatatctgctggcttcttgaat-tctcattctctct-ctttctacctttctcc--ctaattggatgcttatttttgac-tcttgattag-----