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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCATTACTTCCTGATATCCTTGCTAGCGGTAGTTTGGATCAGGAAGTCCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCCgtaatatatctaagcagatcctaatgagtatgtctccttccatgggtgaaatctgaatactaaccttttcagtgatgttctcttatttgatag

Basic information

species Oryza sativa
transcript LOC_Os02g18820.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g18820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G007229_T01 (Zea mays), 5'ss of exon 5
CATCCATTACTTCCTGATATCCTTGCTAGCGGTAGTTTGGATCAGGAAGTCCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCCgtaatatatctaagcagatcctaatgagtatgtctccttccatgggtgaaatctgaatacta---accttttcagtgatgttctcttatttgatag
|||||||||| | |||| ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||||||| | ||| || |||      ||  |   | ||  | ||| | | || | |||  || |   | ||| |   |||||||||       |    
CATCCATTACATTCTGACATCCTGGCTAGCGGAAGTTTGGATCATGAAGTTCGTCTATGGGATGCTAATACTTCAGACTGTATTGGGTCACAAGACTTCCgtaatttttctcagaagac-----tgcttgcat-tctattcatag-tcaattttgagaacaatgtaacttatttttgatgttcttggggcag----

upper sequence: LOC_Os02g18820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 5
CATCCATTACTTCCTGATATCCTTGCTAGCGGTAGTTTGGATCAGGAAGTCCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCCgtaatatatctaagcagatcctaatgagtatgtctccttccatgggtgaaatctgaata-ctaaccttttcagtgatgttctcttatttgatag
||||| |||| | |||| || || ||||| || ||||||||||| || || ||||| ||||| ||||| || ||||||||||||||||| || |||||||||||| | ||| ||  ||  |     |   | |      |||    ||| |  | | || || |  || |   ||||||||   |  | |    
CATCCTTTACATTCTGACATTCTGGCTAGTGGAAGTTTGGATCATGAGGTTCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCCgtaatttctctcagaggactccttgcatcctattcataaccaattctgagaaataagtaacttatattatatttgatgttcctctggtag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671891|gb|CK060577.1|CK060577
EST:     CCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCC                         ATCGGCCAATTGCATCAATAGCATTTCATGC
genomic: CCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCCgtaatatatc ... tatttgatagATCGGCCAATTGCATCAATAGCATTTCATGC
EST: gi|29674170|gb|CB670445.1|CB670445
EST:     CCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCC                         ATCGGCCAATTGCATCAATAGCATTTCATGCAAGGGGGGAGATTCTGGCAG
genomic: CCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCCgtaatatatc ... tatttgatagATCGGCCAATTGCATCAATAGCATTTCATGCAAGGGGGGAGATTCTGGCAG