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GTCAATCCTTCAGATGTAATTATTTTGGAAGGAATTCTGGTTTTCCATGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatatttgcatgccaaactgtcttattatctctagctcttgcccatgaccagtaatcatcagttgtacgtgtggtcagtatgattatttccatat...
species | Oryza sativa |
transcript | LOC_Os02g17320.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAG ATGCTGATGTGCGATTAACAAGGAGGATTCTACGTGACACCATTGAGAAGGEST: gi|29643325|gb|CB648332.1|CB648332
genomic: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatat ... gaattttcagATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGG
EST: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAG ATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGGEST: gi|44678675|gb|CR292109.1|CR292109
genomic: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatat ... gaattttcagATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGG
EST: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAG ATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGGEST: gi|33794950|gb|CF323355.1|CF323355
genomic: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatat ... gaattttcagATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGG
EST: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAG ATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGGEST: gi|58591679|gb|CF989987.1|CF989987
genomic: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatat ... gaattttcagATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGG
EST: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAG ATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGG
genomic: TGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatat ... gaattttcagATGCTGATGTGCGATTAACAAGGAGGATTCGACGTGACACCATTGAGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAATCCTTCAGATGTAATTATTTTGGAAGGAATTCTGGTTTTCCATGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatatttgcatgccaaactgtcttattatctctagctcttgcccatgaccagtaatcatcagttgtacgtgtggtcagtatgattatttccatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA