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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGATATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaactttgtttttggtttattcagtcaacataaccattggctccttctacttttgtgcatatgttatatgagcggaaagagatattacaacaaagataacatacttcctttttcag

Basic information

species Oryza sativa
transcript LOC_Os02g12810.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g12810.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G413069_T01 (Zea mays), 5'ss of exon 7
TTGGGATCATGTCAAGGCTGAGGCATCCAAATGTAGTTCTGTTCTTGGGATATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaactttgtttttggtttattcagtcaacataaccattggctccttctacttttgtgcatatgttatatgagcggaaagagatattacaacaaagataacatacttcctttttcag
|  | |||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||| | || ||||| || ||||||||||| ||||| ||||||||  | |||  |  | | |      |  |||||| ||  | |        ||| || |    ||||  ||  |||||      |||| | | ||| ||   | ||||    || ||||  ||
TGAGAATCATGTCAAGGCTAAGGCATCCCAATGTTGTTCTTTTCTTGGGATATGTGACACAATCGCCTAATCTCTCTATATTAACTGAGTACCTCCCAAGgtttgtacaagctcctctat-----ttctagtcaaaatggcaaacaataatttcaacctg---gcatg-gtactatgaatatggagagttctcacagcagt-acaacaa---tctttttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33796224|gb|CF323978.1|CF323978
EST:     TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAG                         AGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC
genomic: TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaa ... cctttttcagAGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC
EST: gi|58594152|gb|CF992460.1|CF992460
EST:     TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAG                         AGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCCAATTGATGAAAC
genomic: TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaa ... cctttttcagAGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC
EST: gi|33793152|gb|CF322457.1|CF322457
EST:     TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAG                         AGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC
genomic: TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaa ... cctttttcagAGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC
EST: gi|29639858|gb|CB644867.1|CB644867
EST:     TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAG                         AGGGAGCCTTTACCGCCTATTGCATANGCCAAAC
genomic: TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaa ... cctttttcagAGGGAGCCTTTACCGCCTATTGCATAGGCCAAAC
EST: gi|112785946|gb|EE591740.1|EE591740
EST:     TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAG                         AGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC
genomic: TATGTGACACAACCACCAAATCTTTCGATATTAACTGAATACCTTCCAAGgttcctccaa ... cctttttcagAGGGAGCCTTTACCGCCTATTGCATAGGCCAAACAGTCAAATTGATGAAAC