1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATCCTCTTGATTTGCTCCCTCCAAGCAAAATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttcttttttggaatctactagtcagtaaaaagtttccagatagacaaatttattgcattgctttgttgcaaaggatatgaatacaaattaggat...
species | Oryza sativa |
transcript | LOC_Os02g12800.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAAACAAACTTCCGTGAGGTTGCTATCAAGG GTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACTEST: gi|5667501|gb|AU077470.1|AU077470
genomic: AAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttct ... tgtattgcagGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
EST: GAGGTTATACTCAAACAC-AAAAC-AACTTCCGTGAGGTTGCTATCAAGG GTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACTEST: gi|29678879|gb|CB675154.1|CB675154
genomic: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttct ... tgtattgcagGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
EST: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGG GTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACTEST: gi|38479113|gb|CF963246.1|CF963246
genomic: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttct ... tgtattgcagGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
EST: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGG GTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACTEST: gi|218482204|gb|FG951805.1|FG951805
genomic: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttct ... tgtattgcagGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
EST: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGG GTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACTEST: gi|89198471|gb|CI007531.1|CI007531
genomic: GAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttct ... tgtattgcagGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
EST: CAAACTTCCGTGAGGTTGCTATCAAGG GTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
genomic: CAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttct ... tgtattgcagGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTCTGCGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCTCTTGATTTGCTCCCTCCAAGCAAAATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttcttttttggaatctactagtcagtaaaaagtttccagatagacaaatttattgcattgctttgttgcaaaggatatgaatacaaattaggat
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