1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTGTTTCAAGTGCTATAATTGACAAGTACATTGGAGAGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtcttaatctctctctacttttgtctggaaagctagttggacctaaattggcatcctcatttctgcaagacctactctgacatttacatgatctaa...
species | Oryza sativa |
transcript | LOC_Os02g10640.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|58686072|gb|CK074759.1|CK074759
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|300215978|gb|HO088604.1|HO088604
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|86905949|gb|CI292480.1|CI292480
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|218493541|gb|FG956814.1|FG956814
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|218480375|gb|FG953360.1|FG953360
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|396941346|gb|HO188555.1|HO188555
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: CTATGCACGTGATCATCAA CCATGCATAATCTTCAT-GACGAAAATCGATGCCATTGGTGGGCGGCGGTTEST: gi|33795428|gb|CF323584.1|CF323584
genomic: CTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACG-AAATCGATGCCATTGGTGGGCGGCGGTT
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|58662318|gb|CK050998.1|CK050998
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|27577669|gb|CB000364.1|CB000364
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: TGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|58599209|gb|CK009737.1|CK009737
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTCEST: gi|86829542|gb|CI286737.1|CI286737
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
EST: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAA CCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
genomic: AGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta ... ctttacctagCCATGCATAATCTTCATGGACGAAATCGATGCCATTGGTGGGCGGCGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTTCAAGTGCTATAATTGACAAGTACATTGGAGAGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtcttaatctctctctacttttgtctggaaagctagttggacctaaattggcatcctcatttctgcaagacctactctgacatttacatgatctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct