1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCACTACCAGAAAGGCCTTCGTCTAGACCCTGAACATTCAGAACTGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGTgtgagtatgatttctttgtatcaacaaattaggggcttactgcatcatagtaataggatcaaatggtgtgcatgcag
species | Oryza sativa |
transcript | LOC_Os02g10180.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGT GCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACEST: gi|29685029|gb|CB681304.1|CB681304
genomic: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGTgtgagtatga ... gtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
EST: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGT GCTGAACATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTACEST: gi|29663959|gb|CB660234.1|CB660234
genomic: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGTgtgagtatga ... gtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
EST: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGT GCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
genomic: TGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGTgtgagtatga ... gtgcatgcagGCTGAAGATAATGCTGCCAAGGGTAAGCTACGTGTGTCTGCTGAGGACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTACCAGAAAGGCCTTCGTCTAGACCCTGAACATTCAGAACTGAAGAAAGCATATTTTGGGTTGAAAAATCTTGTGAAGAAGACTAAGAGTgtgagtatgatttctttgtatcaacaaattaggggcttactgcatcatagtaataggatcaaatggtgtgcatgcag
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG