1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCAAGTACTTTCAAAGCCTTTCGGTTTCAGCAGCACAGGTGGTCATGTGGGCCGGCAAACCTGTTCAGGAAGATGCTGATGGAGATTGTGAGAAATAAGgtctccccaaacatagtgccaagaaatccagaaaaatttaagccatgcagcttcttgggttggcatctaacatgctattattgacattgttgcag
species | Oryza sativa |
transcript | LOC_Os02g09930.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGGAAGATGCTGATGGAGATTGTGAGAAATAAG AAAGTGACAATCTGGAAGAAGATTCATGTCATCTACAACTTCTTTTTGATCEST: gi|44674207|gb|CR287641.1|CR287641
genomic: CAGGAAGATGCTGATGGAGATTGTGAGAAATAAGgtctccccaa ... attgttgcagAAAGTGACAATCTGGAAGAAGATTCATGTCATCTACAACTTCTTTTTGATC
EST: GGCCGGGAAACTTGTTCAGGAAGATG-TGATGGAGATTGTGAGAAATAAG AAAGTGACAATCTGGAAGAAGATTCATGTCATCTACAACTTCTTTTTGATC
genomic: GGCCGGCAAACCTGTTCAGGAAGATGCTGATGGAGATTGTGAGAAATAAGgtctccccaa ... attgttgcagAAAGTGACAATCTGGAAGAAGATTCATGTCATCTACAACTTCTTTTTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGTACTTTCAAAGCCTTTCGGTTTCAGCAGCACAGGTGGTCATGTGGGCCGGCAAACCTGTTCAGGAAGATGCTGATGGAGATTGTGAGAAATAAGgtctccccaaacatagtgccaagaaatccagaaaaatttaagccatgcagcttcttgggttggcatctaacatgctattattgacattgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT