Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCTTGATCCTGGACCACATGGAAGCGGAAGGTATTCTGTGGAAATGCTCCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAGgttcatatttttacattactactttattattcttcagaatgtttactaccccaaagtttgttaggcgcttcatatattcttggtttagaggcattctttt...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g07880.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g07880.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G138505_T01 (Zea mays), 5'ss of exon 6
CTTCCTTGATCCTGGACCACATGGAAGCGGAAGGTATTCTGTGGAAATGCTCCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAGgttcatatttt-tacattactactttatt--attcttcagaatgtttactaccccaaagtttgttaggcgct-tcatatattcttggtttagaggcattctttt--------------------------------------------------------
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CTTCTTCGATCCTGGCCCACATGGAACTGGAAGGTATACGATGGAAATGCTTCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAGgtacatgtttaatagaatattagaatgattggtgcttcaaaatattcatcattctgttgttttataatcgctgtcttataatcaggacatggcagttcatattgatgcgcgatcacattttttcatgcttttgttgaatatttatttgtgcttgctgcag
upper sequence: LOC_Os02g07880.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G124151_T01 (Zea mays), 5'ss of exon 6
CTTCCTTGATCCTGGACCACATGGAAGCGGAAGGTATTCTGTGGAAATGCTCCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAGgttcatatttttacattactactttattattcttcagaatgtttactaccccaaagtttgttaggcgcttcatatattcttggtttaga--ggcattctttt-----------------------------------------------------------------------------
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CTTCCTGGATCCTGGCCCACATGGAACTGGAAGGTATTCCATGGAAATGCTTCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAGgt--atatgtttgctatactatctg--tatttaatagaatgattgatgcttcaaa-ttagatat---ctgtatgtattcataattctgcccgtcgtataatcaggacatggcagttcgtattgatgtgtgtcacatttttttcatgattttgctgaatatttttttgtgcttgctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29662011|gb|CB658286.1|CB658286EST: AGGAAGGGTGCCCAG TGGTTTGCTGTAACACGAAGGCATGCTTTACTGATTTTAGCAGACCACCTT
genomic: AGGAAGGGTGCCCAGgttcatattt ... tgtgttgtagTGGTTTGCTGTAACACGAAGGCATGCTTTACTGATTTTAGCAGACCACCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCTTGATCCTGGACCACATGGAAGCGGAAGGTATTCTGTGGAAATGCTCCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAGgttcatatttttacattactactttattattcttcagaatgtttactaccccaaagtttgttaggcgcttcatatattcttggtttagaggcattctttt
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