1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttaccatgaattttgagtttcgtcttatatggttatcatgaacactatgcatcaagatagtagcttgagatctgtcatcattaatcatgtgcctttgctaaagttttctgactatatggcag
species | Oryza sativa |
transcript | LOC_Os02g07870.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT ATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGCEST: gi|58673192|gb|CK061878.1|CK061878
genomic: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttacc ... tatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGC
EST: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT ATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGCEST: gi|58662103|gb|CK050783.1|CK050783
genomic: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttacc ... tatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGC
EST: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT ATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGCEST: gi|58663588|gb|CK052274.1|CK052274
genomic: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttacc ... tatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGC
EST: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT ATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCAEST: gi|58666816|gb|CK055502.1|CK055502
genomic: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttacc ... tatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCA
EST: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT ATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGCEST: gi|27547953|gb|CA765929.2|CA765929
genomic: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttacc ... tatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGC
EST: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCT ATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGC
genomic: GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttacc ... tatatggcagATTGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGGAGATATTATCACGGGTGGAGATCTATATGCTgtaagttaccatgaattttgagtttcgtcttatatggttatcatgaacactatgcatcaagatagtagcttgagatctgtcatcattaatcatgtgcctttgctaaagttttctgactatatggcag
- TTGGAG
- - TGGAGA
- - GGAGAT
- - - - - - - - - - GGTGGA
- - - - - - - - - - GTGGAG
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATC