1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CCTGTTGGAGTAGTTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagcaatgcactacacttctgttcttctaaactgttcaaaagggagaaatagctaaggtagtacatgttattctcttatatgtggttttgtacttttgtgcag
species | Oryza sativa |
transcript | LOC_Os02g07760.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGEST: gi|33794852|gb|CF323305.1|CF323305
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
EST: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTNGTCGTTGTCAAGCCATCAGAEST: gi|218492832|gb|FG951181.1|FG951181
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACT-GTCGTTGTCAAGCCATCAGA
EST: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGEST: gi|58604584|gb|CK015112.1|CK015112
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
EST: TTGGAGCTGTTGCAGCATGGAATTTTCCTTT-GCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGEST: gi|88288968|gb|CI520298.1|CI520298
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
EST: AGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGEST: gi|88519470|gb|CI447124.1|CI447124
genomic: AGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
EST: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGEST: gi|218488132|gb|FG951352.1|FG951352
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
EST: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGEST: gi|218491346|gb|FG955033.1|FG955033
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
EST: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAG GTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
genomic: TTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagca ... ttttgtgcagGTTGGACCAGCATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTTGGAGTAGTTGGAGCTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGgtctcgagcaatgcactacacttctgttcttctaaactgttcaaaagggagaaatagctaaggtagtacatgttattctcttatatgtggttttgtacttttgtgcag
- - - - - - TTGGAG
- - - - - - - GGAGCT
- - - - - - - - - GCTGTT
- - - - - - - - - - - - - - CATGGA