1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGgttctagttcttaacaacaacacacctgtcatgtaaaacttttaacttgctgtttatgtccttatttaaagcattttatttacgcaattgtag
species | Oryza sativa |
transcript | LOC_Os02g07210.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAATGAAAAG ATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGGEST: gi|8858531|gb|AU095849.1|AU095849
genomic: AAGAAAATGAAAAGgttctagttc ... gcaattgtagATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGG
EST: CGATGGAATATAAGGTTGTACTTGAAGAAAATNAGAAAG ATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGGEST: gi|157651555|gb|EX451189.1|EX451189
genomic: CGATGGAATATAAGG-TGTACTTGAAGAAAATGA-AAAGgttctagttc ... gcaattgtagATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGG
EST: GTACTTGAAGAAAATGAAAAG ATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGGEST: gi|88907452|gb|CI090246.1|CI090246
genomic: GTACTTGAAGAAAATGAAAAGgttctagttc ... gcaattgtagATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGG
EST: GAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAG ATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGGEST: gi|33683116|gb|CF311355.1|CF311355
genomic: GAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGgttctagttc ... gcaattgtagATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGG
EST: GACGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAG ATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGGEST: gi|88318193|gb|CI629474.1|CI629474
genomic: GAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGgttctagttc ... gcaattgtagATCTGGAGAATGGGGAGATCATGTGACCTTACAAGCGGCTGCAGACCGG
EST: GAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAG ATCTGGAGAATGGGGAG
genomic: GAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGgttctagttc ... gcaattgtagATCTGGAGAATGGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAAGGAATTCAGGAAACACTATGAAGGCTATGTACCGATGGAATATAAGGTGTACTTGAAGAAAATGAAAAGgttctagttcttaacaacaacacacctgtcatgtaaaacttttaacttgctgtttatgtccttatttaaagcattttatttacgcaattgtag
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA