1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAATGCATCTTGTTTTATTTACAGGAGGAGATTGTCGATAGCTCCCTTGAGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccag
species | Oryza sativa |
transcript | LOC_Os02g05630.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTTCCTCATCCTTGCTAACGATGGACTTTGGGATGTTGTAAGTAACAAG GCAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACACGCAGCGAAEST: gi|27576293|gb|CA998987.1|CA998987
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagG-AAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAA
EST: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGEST: gi|3767442|gb|AU031552.1|AU031552
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGCATCTTGTTTTATTTACAGGAGGAGATTGTCGATAGCTCCCTTGAGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA