1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctctctctctctctctcacacacacacacacacacacgcacacagttttagtttgttacatttcactgaataaacctgtgctgcag
species | Oryza sativa |
transcript | LOC_Os02g01170.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|29678536|gb|CB674811.1|CB674811
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|29664291|gb|CB660566.1|CB660566
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|163923587|gb|EG711528.1|EG711528
genomic: CGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: AGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|29678538|gb|CB674813.1|CB674813
genomic: AGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|12623168|gb|AU173381.1|AU173381
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|29670955|gb|CB667230.1|CB667230
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|66922255|gb|CX109103.1|CX109103
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAAEST: gi|33793172|gb|CF322467.1|CF322467
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
EST: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAG CCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
genomic: CACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctct ... tgtgctgcagCCTGATTCATTGGTGGATAATATAAAATTTGATCATGGGTATACTGCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTTGACATCTCATCCCTGAAAATATTTTCACCTGAAGAGCTTGACTATCTAATATGTGGTCGCCGAGAAATTTGGGAGgtaatgctctctctctctctctcacacacacacacacacacacgcacacagttttagtttgttacatttcactgaataaacctgtgctgcag
- - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - GAGCTT