1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttctctgtttatctttacttcctttgctcttatgctagatttaccttgttagttgaactgaaatgtgtactttatgtcaaaag
species | Oryza sativa |
transcript | LOC_Os01g73790.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACTTTAGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATT GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACEST: gi|58675034|gb|CK063721.1|CK063721
genomic: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttc ... atgtcaaaagGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC
EST: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATT GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACEST: gi|58587411|gb|CF985719.1|CF985719
genomic: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttc ... atgtcaaaagGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC
EST: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATT GAAAATCCTGCTCGTGCCAATGGEST: gi|25801443|gb|CA757404.1|CA757404
genomic: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttc ... atgtcaaaagGAAAATCCTGCTCGTGCCAATGG
EST: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATT GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACEST: gi|58655446|gb|CK044126.1|CK044126
genomic: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttc ... atgtcaaaagGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC
EST: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATT GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACEST: gi|27576710|gb|CA999404.1|CA999404
genomic: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttc ... atgtcaaaagGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC
EST: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATT GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC
genomic: GAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttc ... atgtcaaaagGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTgtatgttttctctgtttatctttacttcctttgctcttatgctagatttaccttgttagttgaactgaaatgtgtactttatgtcaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT