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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTTGAGCAATCTTCGGTATCATACTAGCGTCATAATATCATTATTTCAGTCTCTTGGAACCCTTTCTATCAGTTCAAGACGCTTGAATCTTCTCAGgtaaatgcactgtccttgtgtgaaatgcttgccctgtcatgttatttttttttgggggggggggggggtgcactgtcacatgtttaatggacattgataa...

Basic information

species Oryza sativa
transcript LOC_Os01g73530.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G375807_T01 (Zea mays), 5'ss of exon 5
AGATGTTGAGCAATCTTCGGTATCATACTAGCGTCATAATATCATTATTTCAGTCTCTTGGAACCCTTTCTATCAGTTCAAGACGCTTGAATCTTCTCAGgtaaatgcactgtccttgtgtgaaatgcttgccctgtcatgttatttttttttgggggggggggggggtgca--ctgtcacatgtttaatggacattgataa
|||||||||||||||| || || || || ||||| ||||||||| ||||||| |||||||||||| ||||||| |||||||| ||||| ||| ||||||||||| |||    |   ||||| |||| ||    | | | |||   ||   |       |     |   |  |  ||||  |  ||  | |  | |   | | 
AGATGTTGAGCAATCTCCGATACCACACCAGCGTGATAATATCACTATTTCAATCTCTTGGAACCATTTCTATTAGTTCAAGGCGCTTAAATATTCTCAGgtaactgctgaattgctgtgtcaaatactgatgcagcc-tgtaggttaagtacacactgatatagtaatctaacctgtatccggtcaattacatacctaaa-

upper sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA11G38160.1 (Glycine max), 5'ss of exon 6
AGATGTTGAGCAATCTTCGGTATCATACTAGCGTCATAATATCATTATTTCAGTCTCTTGGAACCCTTTCTATCAGTTCAAGACGCTTGAATCTTCTCAGgtaaat-gcactgtccttgtgtgaaatgcttgccctgtcatgttatttttttttgggggggggggggggtgcactgtcacatgtttaatggacattgataa---------------------------------------
| ||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| ||||| |||||||||||| |||||||  | |||| ||||||||   |   |   | | | | |   ||  ||      | || |||     || |   |       |      |    || ||  ||  |  | ||| ||                                         
ATATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGgtctgttagatctttcattttttccatttttagaaattgatattagaggcttctattgcacatttgcaccttatatgcaaatcctttgta-agattcattttgtctgcctacatgttctgacctatctgtatgattttag

upper sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA05G31270.1 (Glycine max), 5'ss of exon 4
AGATGTTGAGCAATCTTCGGTATCATACTAGCGTCATAATATCATTATTTCAGTCTCTTGGAACCCTTTCTATCAGTTCAAGACGCTTGAATCTTCTCAGgtaaatgca---------ctgtccttgtgtgaaatgct---------tgccctgtcatgttatttttttttgggggggggggggg---gtgcactgtcacatgtttaatggacattgataa---
||||| | ||||||||  | ||||||||||| ||||| || || |||||||| || || ||||| |||||||||||| |||||||  | || |  |||||||| ||             ||||| | |   |  || |             || | ||| ||||  ||| | |||             ||  |||   |      | ||    ||   | |   
AGATGCTAAGCAATCTAAGATATCATACTAGTGTCATTATTTCCTTATTTCAATCGCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAACCGACTCAGgtatatttgactggtcatttgtccctttagaagttgatattagaggacatgctttgatgctattcctttctagggtttttttttttttgtatactaatattctagttatctgtatgttttacag

upper sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 3
AGATGTTGAGCAATCTTCGGTATCATACTAGCGTCATAATATCATTATTTCAGTCTCTTGGAACCCTTTCTATCAGTTCAAGACGCTTGAATCTTCTCAGgtaaatgca---------ctgtcctt----------gtgtgaaatg-cttgccctgtcatgttatttttttttgggggggggggggggtgcactgtcacatgtttaatggacattgataa---------
||||| | ||||||||  | ||||||||||| ||||| || ||  ||||||| ||||| ||||| |||||||||||| |||||||  | || |  |||||||| ||             ||||| |           | | | | | | |||| ||| ||| ||||  ||| | |||   |    |  || |     |||  |    | |  |||  ||          
AGATGCTAAGCAATCTAAGATATCATACTAGTGTCATTATTTCCCTATTTCAATCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAACCGACTCAGgtatatttgaccagtcatttgtcccttaagaagttgatattagaggacatgccttgt-atgctattcctttctagggtttgttttgtttgtat----acaaatactctagttatttgtatgttttacag

upper sequence: LOC_Os01g73530.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA18G02110.1 (Glycine max), 5'ss of exon 7
AGATGTTGAGCAATCTTCGGTATCATACTAGCGTCATAATATCATTATTTCAGTCTCTTGGAACCCTTTCTATCAGTTCAAGACGCTTGAATCTTCTCAGgtaaat-gcactgtccttgtgtgaaatgcttgccctgtcatgtt----atttttttttgggggggggggggggtgcactgtcacatgtttaatggacattgataa---------------------------
||||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| ||||| |||||||||||| |||||||  | ||||  |||||||   |   |   | | | | |   ||  ||      | || ||      ||   ||           |    | |  ||| | ||   |  ||       | |                            
AGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGCCTCAGgtctgttagatctttcattttttccatttttagaagttgatatttgaggcttccattgcaccttatatgcaattcctttgtaagattcattttgtctgcctacatgttctgacctatctgtatgtattacag