1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCCTTCTTGAGGCTGTGAGCTACCATGAGGTGCAAACAAGAGACCTCTCAGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagagagctgtcagtttctgagacttgatacagtgtttgatttgcattctttttaatttggcctgtaatcttgcag
species | Oryza sativa |
transcript | LOC_Os01g73450.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|87026955|gb|CI259608.1|CI259608
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|86493459|gb|CI136092.1|CI136092
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|27547309|gb|CA765514.2|CA765514
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|33801435|gb|CF326589.1|CF326589
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|84117636|gb|CD151403.1|CD151403
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|88561287|gb|CI492004.1|CI492004
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: TGGACATGACTGCCATTACGCTATGCCAAGAAAACGACATTCCTG TTGTCGTGTTTAATTTCCGAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|87006935|gb|CI275243.1|CI275243
genomic: TGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|29663412|gb|CB659687.1|CB659687
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTGEST: gi|218484425|gb|FG955570.1|FG955570
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGAAAGCTATTGTTG
EST: AGTTATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTG TTGTCGTGTTTAATTTGCAA
genomic: AGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagag ... aatcttgcagTTGTCGTGTTTAATTTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTTCTTGAGGCTGTGAGCTACCATGAGGTGCAAACAAGAGACCTCTCAGTAATGGACATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGgtaaggagagagctgtcagtttctgagacttgatacagtgtttgatttgcattctttttaatttggcctgtaatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA