Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACAAGTATGGGCAGGAGGCCTTCTTCAAAAGGGCAGTGAGGTTGTGTATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatatctcattcctcttggaattctcagttcataatattatccagaattgttggtacttataatttgttgtagttgttcaatctggttcatttga...

Basic information

species Oryza sativa
transcript LOC_Os01g68770.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68770.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G103812_T02 (Zea mays), 5'ss of exon 6
TGGACAAGTATGGGCAGGAGGCCTTCTTCAAAAGGGCAGTGAGGTTGTGTATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatatctcattcctcttggaattctc-agttcataatattatccagaattgttggtacttataatttgttgtagttgttcaatctggttcatt-tga--------
||||||||||||||  || || |||||||| ||||||||||| || || ||||| ||||| ||||   | ||| ||||||||| |||||| || |||||||||||       |   ||||||  ||   || |    | || ||| | || |||| ||     ||    |||   || || |||     | ||||||| |||        
TGGACAAGTATGGGTTGGTGGTCTTCTTCAGAAGGGCAGTGATGTCGTCTATGTTACTGATGATGGTCAGGAACAGCAGTACAATGTGCCTCAAGTCAAGgtaat-------ctcccctcttaaaaccttctaaaatacaagatt-ttcataattattacggtttgggtttta--gtggtggttacggtttgttcattgtgaagttacta

upper sequence: LOC_Os01g68770.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G837351_T01 (Zea mays), 5'ss of exon 5
TGGACAAGTATGGGCAGGAGGCCTTCTTCAAAAGGGCAGTGAGGTTGTGTATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatatctcattcctcttggaattctcag-ttcataatattatccagaattgttggtacttataatttgttgt-agttgttcaatctggttcatttga-
||||||||||||||  || || ||||||| ||||||| |||| ||||| ||||||||||| |||    ||||||| ||||| | |||||| || ||||||||||       |||  | |  || ||     || |||||   |||||  ||| ||    | | |||    | |||   ||| ||||| | |||    |   | 
TGGACAAGTATGGGTTGGTGGTCTTCTTCCAAAGGGCGGTGATGTTGTCTATGTAACTGATGATAGTCAAGAAGAACAGTATAATGTGCCTCAAGTCAAGgtaacctcccttcaaactttctgaaacgagaagattcatgtaattatt-agagtt--caggatttagcggtggttacgagtggttcattatggagtttccaaa

upper sequence: LOC_Os01g68770.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G180331_T01 (Zea mays), 5'ss of exon 2
TGGACAAGTATGGGCAGGAGGCCTTCTTCAAAAGGGCAGTGAGGTTGTGTATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatatctcattcctcttggaattctcag-ttcataatattatccagaattgttggtacttataatttgttgt-agttgttcaatctggttcatttga-
|| |||||||||||  || || ||||||||||||||  |||| ||||| ||||||||||| |||    ||||||| || || | |||||| || ||||||||||       |||  | |  || ||     || |||||   |||||  ||| ||  | | | |||    | |||   ||| ||||| |||||        | 
TGAACAAGTATGGGTTGGTGGTCTTCTTCAAAAGGGTGGTGATGTTGTCTATGTAACTGATGATAGTCAAGAAGAACAATATAATGTGCCTCAAGTCAAGgtaacctcccttcaaactttctgaaacgagaagattcatgtaattatt-agagtt--taggatttagctgtggttacgagtggttcattctggagttcccaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86260220|gb|CI066093.1|CI066093
EST:     ACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|87042032|gb|CI194656.1|CI194656
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29659098|gb|CB655373.1|CB655373
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86256229|gb|CI012519.1|CI012519
EST:     CTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: CTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29642050|gb|CB647057.1|CB647057
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|38468782|gb|CF952913.1|CF952913
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATAATTCAGCTGAGCCTGGATNGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86823668|gb|CI258728.1|CI258728
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89166216|gb|CI103306.1|CI103306
EST:     AGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCT-GATGGG
genomic: AGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|3763597|gb|AU030349.1|AU030349
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89163840|gb|CI100730.1|CI100730
EST:     AAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|218496469|gb|FG953873.1|FG953873
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTG
EST: gi|29644289|gb|CB649296.1|CB649296
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89182590|gb|CI113959.1|CI113959
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|87026492|gb|CI252446.1|CI252446
EST:     TGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGG
genomic: TGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGT-CAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGG
EST: gi|109712670|gb|CI105278.1|CI105278
EST:     TGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: TGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86434315|gb|CI094658.1|CI094658
EST:     GTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89161783|gb|CI100943.1|CI100943
EST:     GTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86512634|gb|CI155267.1|CI155267
EST:     AAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|87037995|gb|CI192617.1|CI192617
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|3763600|gb|AU030352.1|AU030352
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29638055|gb|CB643064.1|CB643064
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88245619|gb|CI245468.1|CI245468
EST:     AGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89168317|gb|CI109521.1|CI109521
EST:     GAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|22306525|gb|BQ907747.1|BQ907747
EST:     ATGTAACTGAGGATGACAAAGAAGACCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88964434|gb|CI055130.1|CI055130
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86256546|gb|CI061309.1|CI061309
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86498704|gb|CI141337.1|CI141337
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29641235|gb|CB646242.1|CB646242
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86495946|gb|CI138579.1|CI138579
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89187107|gb|CI047174.1|CI047174
EST:     TGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: TGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86540175|gb|CI180381.1|CI180381
EST:     CCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGTCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: CCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89165445|gb|CI102535.1|CI102535
EST:     GATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|18388691|gb|BM421889.1|BM421889
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88957645|gb|CI095419.1|CI095419
EST:     GAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|18387686|gb|BM420884.1|BM420884
EST:     GAGCAGTACACGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GAGCAGTACA-GTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89187685|gb|CI115131.1|CI115131
EST:     TGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: TGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89165839|gb|CI102929.1|CI102929
EST:     GCCCCAGTTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88840489|gb|CI079943.1|CI079943
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|89163716|gb|CI100606.1|CI100606
EST:     GCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29656380|gb|CB652655.1|CB652655
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|58588209|gb|CF986517.1|CF986517
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29667413|gb|CB663688.1|CB663688
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|109711587|gb|CI013192.1|CI013192
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88994448|gb|CI117600.1|CI117600
EST:     ACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCTACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88956291|gb|CI092579.1|CI092579
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88250072|gb|CI249921.1|CI249921
EST:     GTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: GTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29680108|gb|CB676383.1|CB676383
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|22306236|gb|BQ907458.1|BQ907458
EST:     TGTAACTGAGGATGACACAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: TGTAACTGAGGATGACA-AAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|18386965|gb|BM420163.1|BM420163
EST:     AGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|22304743|gb|BQ905965.1|BQ905965
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|22306288|gb|BQ907510.1|BQ907510
EST:     AACTGAGGATGACACAAGAAGAGCACGTACACGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGT-GGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AACTGAGGATGACA-AAGAAGAGCA-GTACA-GTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|38472891|gb|CF957023.1|CF957023
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATNGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29641846|gb|CB646853.1|CB646853
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86252373|gb|CI056110.1|CI056110
EST:     CTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: CTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|58604730|gb|CK015258.1|CK015258
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88903104|gb|CI088642.1|CI088642
EST:     AGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|87041193|gb|CI195815.1|CI195815
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|58610206|gb|CK038105.1|CK038105
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86419565|gb|CI054366.1|CI054366
EST:     AGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86496038|gb|CI138671.1|CI138671
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|87041416|gb|CI196038.1|CI196038
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|66913768|gb|CX100616.1|CX100616
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|86881415|gb|CI322535.1|CI322535
EST:     CCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: CCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29645926|gb|CB650933.1|CB650933
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88989723|gb|CI107410.1|CI107410
EST:     AGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: AGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29679422|gb|CB675697.1|CB675697
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|88198312|gb|CI198162.1|CI198162
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
EST: gi|29628039|gb|CB633050.1|CB633050
EST:     ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAG                         GGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG
genomic: ATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 155

TGGACAAGTATGGGCAGGAGGCCTTCTTCAAAAGGGCAGTGAGGTTGTGTATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatat ... cttgtatcagGGTCATCGACTTAGAGGTGGGCCACAGATGATTCAGCTGAGCCTGGATGGGAAGAGGATATATGTGACCAACTCTCTTTTCAGCCGATGGGACGAGCAGT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGACAAGTATGGGCAGGAGGCCTTCTTCAAAAGGGCAGTGAGGTTGTGTATGTAACTGAGGATGACAAAGAAGAGCAGTACAGTGTGCCCCAGGTCAAGgtaattatatctcattcctcttggaattctcagttcataatattatccagaattgttggtacttataatttgttgtagttgttcaatctggttcatttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG